View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15525_low_2 (Length: 642)
Name: NF15525_low_2
Description: NF15525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15525_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 517; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 107 - 627
Target Start/End: Original strand, 36563667 - 36564187
Alignment:
| Q |
107 |
tatttcataacatttcataccttaaaaaatggtgaagggcgatgagacattgacaagaaattaaatgtttatagtcatacctagaagaaacaataaaaac |
206 |
Q |
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| T |
36563667 |
tatttcataacatttcataccttaaaaaatggtgaagggcgatgagacattgacaagaaattaaatgtttatagtcatacctagaagaaacaataaaaac |
36563766 |
T |
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| Q |
207 |
cacatacaaactggtcattaaaaactccaaccaaactttccttgcgcattaatcacatttaactaaccttgaacaactactatatatacatatattaaac |
306 |
Q |
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| T |
36563767 |
cacatacaaactggtcattaaaaactccaaccaaactttccttgcgcattaatcacatttaactaaccttgaacaactactatatatacatatattaaac |
36563866 |
T |
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| Q |
307 |
cttctgtgtaagccagaatagcttctccaaaagagttaaaataaaaatagtacataatattattacttcattattatcatgaggcttatatgcatatgca |
406 |
Q |
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| T |
36563867 |
cttctgtgtaagccagaatagcttctccaaaagagttaaaataaaaatagtacataatattattacttcattattatcatgaggcttatatgcatatgca |
36563966 |
T |
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| Q |
407 |
tagcatggttaatattgataacccaaattatcatggtgacttgcaagactaaaaatcatgtaccagcagtaattgtctttggtgattcttctgtggattc |
506 |
Q |
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| T |
36563967 |
tagcatggttaatattgataacccaaattatcatggtgacttgcaagactaaaaatcatgtaccagcagtaattgtctttggtgattcttctgtggattc |
36564066 |
T |
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| Q |
507 |
tggaaacaataataggatagctacacttctcaagagcaattttaaaccttacggccgtgatttcgaaggtggccgccctaccggacggttttgtaacggt |
606 |
Q |
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| T |
36564067 |
tggaaacaataataggatagctacacttctcaagagcaattttaaaccttacggccgtgacttcgaaggtggccgccctaccggacggttttgtaacggt |
36564166 |
T |
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| Q |
607 |
cgtactccaccggacttcatc |
627 |
Q |
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| T |
36564167 |
cgtactccaccggacttcatc |
36564187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 399 - 626
Target Start/End: Original strand, 36576588 - 36576815
Alignment:
| Q |
399 |
catatgcatagcatggttaatattgataacccaaattatcatggtgacttgcaagactaaaaatcatgtaccagcagtaattgtctttggtgattcttct |
498 |
Q |
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| T |
36576588 |
catatgcatcgtatggctaatattgataactcaaatgatcatggtgacttgcaataatgaaaattatgtaccagcagtaattgtgtttggtgactcctct |
36576687 |
T |
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| Q |
499 |
gtggattctggaaacaataataggatagctacacttctcaagagcaattttaaaccttacggccgtgatttcgaaggtggccgccctaccggacggtttt |
598 |
Q |
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| T |
36576688 |
gttgattctggaaacaacaatatgatatcaacatttctaaagagcaattttagaccttacggtcgtgacatcgatggtggccgccccaccggacgatttt |
36576787 |
T |
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| Q |
599 |
gtaacggtcgtactccaccggacttcat |
626 |
Q |
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| T |
36576788 |
caaacggccgtattccaccagatttcat |
36576815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 36563450 - 36563539
Alignment:
| Q |
19 |
taaggatgtgagagaaaagattcaatgtaaaagtatgccatctggtagggagaatatgtaaaactaatttaacttatctattaaatcata |
108 |
Q |
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| T |
36563450 |
taaggatgtgagagaaaagattcaatgtaaaagtatgtcatctggtagggagaatatttaaaactaatttaacttatctattaaatcata |
36563539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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