View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15525_low_3 (Length: 528)
Name: NF15525_low_3
Description: NF15525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15525_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 57 - 513
Target Start/End: Complemental strand, 54809993 - 54809529
Alignment:
| Q |
57 |
aaggataagaaaagtgaagcaattgaataatc--------gaatatggagataacaaacatgtcccaagctctgcaacttcacgctcaattcataaaatc |
148 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
54809993 |
aaggataagaaaagtgaagcaattgaatcatctttgagtagaatatggagataacaaacatgtcccaagctcttcaacttcacgctcaattcataaaatc |
54809894 |
T |
|
| Q |
149 |
acaaaaccaacgaaacttctcaaagctcttcactttcgttgctcaatcaccttccggcgacctcaactacgctcgtcttcttctcaacaccaacccatct |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54809893 |
acaaaaccaacgaaacttctcaaagctcttcactttcgctgctcaatctccttccggcgacctcaactacgctcgtcttcttctcaacaccaacccatct |
54809794 |
T |
|
| Q |
249 |
ctcaactcttactactacaacaccatcattcgtgcttattctcatacttccaaccctacccatcattttcaagcactttctctcttcattttcatgcttc |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54809793 |
ctcaactcttactactacaacaccatcattcgtgcttattctcatacttccaaccctacccatcattttcaagcactttctctcttcattttcatgcttc |
54809694 |
T |
|
| Q |
349 |
aaccacacaccaatgtacccaaaccagatacctttacttattcctttgctttgaagtcttgtggacgtttgaaacttacccaacaagcaaaacagcttca |
448 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54809693 |
aaccacataccaatgtacccaaacctgatacctttacttattcctttgctttgaagtcttgtggacgtttgaaacttacccaacaagcaaaacagcttca |
54809594 |
T |
|
| Q |
449 |
tggcttcataaataagatgggttttggtttcgatttatatattcaaaacgcccttattcatatgt |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54809593 |
tggcttcataaataagatgggttttggtttcgatttatatattcaaaacgcccttattcatatgt |
54809529 |
T |
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