View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15525_low_7 (Length: 359)
Name: NF15525_low_7
Description: NF15525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15525_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 51280948 - 51281274
Alignment:
| Q |
1 |
attagagaaagttgatggctcattttgttacaactagcaattgttgaagttacaaatagattccgataaataaaaagtccaaataaaacaactaaaactt |
100 |
Q |
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| T |
51280948 |
attagagaaagttgatggctcattttgttacaactagcaattgttgaagttacaaatagattccgataaataaaaagtccaaataaaacaactaaaactt |
51281047 |
T |
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| Q |
101 |
ttattttagtaaaataatgcataattcttaatttcattgaacaaaattatttaatagtattattttagtcacactaaaaacatagtgttcaatctacctc |
200 |
Q |
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| T |
51281048 |
ttattttggtaaaataatgcataattcttaatttcattgaacagaattatttaatagtattattttagtcacaccaaaaacatagtgttcaatctacctc |
51281147 |
T |
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| Q |
201 |
caggtaaaacaagcattttactnnnnnnnntaatatataaaaggtataacaagnnnnnnnnnnaggaacgtagaacaagccatgtgcaacataatacaaa |
300 |
Q |
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| T |
51281148 |
caggtaaaacaagcattttactaaaaaaa--aatatataaaaggtataacaag-tttttttttaggaacgtagaacaagccatgtgcaacataatacaaa |
51281244 |
T |
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| Q |
301 |
atctaaaatcattgtattttaataaagtaa |
330 |
Q |
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|||||||||||||||| |||| |||||||| |
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| T |
51281245 |
atctaaaatcattgtagtttagtaaagtaa |
51281274 |
T |
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