View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15525_low_8 (Length: 339)

Name: NF15525_low_8
Description: NF15525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15525_low_8
NF15525_low_8
[»] chr1 (5 HSPs)
chr1 (16-149)||(16963501-16963637)
chr1 (245-339)||(16965328-16965422)
chr1 (188-242)||(16965233-16965287)
chr1 (148-196)||(16963718-16963766)
chr1 (298-339)||(16954802-16954843)


Alignment Details
Target: chr1 (Bit Score: 99; Significance: 8e-49; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 16963501 - 16963637
Alignment:
Q  16 aataattcaatttttgttttaaaataaacataaactacgatacttcagcaagaaatacttgattgttcatagctccaaataaaaattacttggatacaca 115  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  16963501 aataattcaacttttgttttaaaataaacatatactacgatacttcagcaagaaatacttgattggtcatagctccaaataaaaattacttggatacaaa 16963600  T
Q  116 taaaactatattttt---aaagaaattcattacttaa 149  Q
    |||||||| ||||||   ||| |||||||||||||||    
T  16963601 taaaactacatttttagaaaaaaaattcattacttaa 16963637  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 245 - 339
Target Start/End: Original strand, 16965328 - 16965422
Alignment:
Q  245 attagtaagtaatcttaaagagctgatctcattagtcattttcataagctcataatctactggaagtttaaaatctttgatttgatcatagcacc 339  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16965328 attagtaagcaatcttaaagagctgatctcattagtcattttcataagctgataatctactggaagtttaaaatctttgatttgatcatagcacc 16965422  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 16965233 - 16965287
Alignment:
Q  188 aatattgaacctctcatgaagatagtatgagaatgcaagtactctggttaaaaaa 242  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16965233 aatattgaacctctcatgaagatagtatgagaatacaagtactctggttaaaaaa 16965287  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 16963718 - 16963766
Alignment:
Q  148 aattctttttactttaactaaagcctaaatattgtgtccaaatattgaa 196  Q
    ||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  16963718 aattcctttcactttaactaaaacctaaatattgtgtccaaatattgaa 16963766  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 16954802 - 16954843
Alignment:
Q  298 aatctactggaagtttaaaatctttgatttgatcatagcacc 339  Q
    |||||| |||||||||| ||||||||||||||||||| ||||    
T  16954802 aatctattggaagtttacaatctttgatttgatcataacacc 16954843  T

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