View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15525_low_9 (Length: 331)
Name: NF15525_low_9
Description: NF15525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15525_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 4948512 - 4948200
Alignment:
| Q |
1 |
tgttaatttattttcaattcaaacgtgtcctatatgtaatattgtcctatatataattactaaattattaatttatttacctgagcaacaatggttacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4948512 |
tgttaatttattttcaattcaaacgtgtcctatatgtaatattgtcctatatataaatactaaattataaatttatttacctgagcaacaatggttacat |
4948413 |
T |
|
| Q |
101 |
caacaatgttgtttccaaagggcaaaaaggtactactatggacagtgagattaaggttttctaatttgccaagcaccgtagcggcacgtccactgtgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4948412 |
caacaatgttgtttccaaagggcaaaaaggtactactatggacagtgagattaaggttttctaattggccaagcaccgtagcggcacgtccactgtgttt |
4948313 |
T |
|
| Q |
201 |
gtcacattgaatcttgattagtacatctttgcttgaaactcttacttcgatttcaggaagtggttggttattggagttgctatcatcatcattattatta |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4948312 |
gtcacattgaatcttgatgagtacatctttgcttgaaactcttacttcgatttcaggaagtggttggttattggagttgctatcatcatcattattatta |
4948213 |
T |
|
| Q |
301 |
gtgaagataatag |
313 |
Q |
| |
|
||||||||||||| |
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| T |
4948212 |
gtgaagataatag |
4948200 |
T |
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