View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15526_high_5 (Length: 220)
Name: NF15526_high_5
Description: NF15526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15526_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 5756186 - 5756395
Alignment:
| Q |
1 |
catgtcaataatggtgtgaataattggaattttagatctataagcagctctaggttcaaggtgtgcaccaagtcttcaaatgtcagtgatcaaagaaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5756186 |
catgtcaataatggtgtgaataattggaattttagatctatgagcagctctaggttcaaggtgtgcaccaagtcttcaaatgtcagtgatcaaagaaatt |
5756285 |
T |
|
| Q |
101 |
caagcattaagcgtttgcaaactccatacacctacccttgaatatttgataacacttgcatatcaaataagagatgagtatcaaggcgaaagataatttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5756286 |
caagcattaagcgtttgcaaactccatacacctacacttgaatatttgataacacttgcatatcaaataagagatgagtatcaaggcgaaagataatttc |
5756385 |
T |
|
| Q |
201 |
aatttgtaat |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
5756386 |
aatttgtaat |
5756395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 5763231 - 5763435
Alignment:
| Q |
5 |
tcaataatggtgtgaataattggaattttagatctataagcagctctaggttcaaggtgtgcaccaagtcttcaaatgtcagtgatcaaagaaattcaag |
104 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5763231 |
tcaataatggtgtgaataattggaactttagatctataagcagctctaagttcaatgtgtg-accaagtgttcaaatgtcagtgatcaaagaaattcaag |
5763329 |
T |
|
| Q |
105 |
cattaagcgtttgcaaactccatacacctacccttgaatatttgataacacttgcatatcaaataagagatgagtatcaaggcgaaagataatttcaatt |
204 |
Q |
| |
|
|| ||| ||||||||||||||| ||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| | |
|
|
| T |
5763330 |
caataaacgtttgcaaactccacgcacctacactggaatatttgataacacttgcatatcaaagaagagatgagtatcaaggcgaaagttaatttcaaat |
5763429 |
T |
|
| Q |
205 |
tgtaat |
210 |
Q |
| |
|
|||||| |
|
|
| T |
5763430 |
tgtaat |
5763435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 171
Target Start/End: Original strand, 5763449 - 5763588
Alignment:
| Q |
32 |
ttagatctataagcagctctaggttcaaggtgtgcaccaagtcttcaaatgtcagtgatcaaagaaattcaagcattaagcgtttgcaaactccatacac |
131 |
Q |
| |
|
|||||||||| || | ||||| | |||||||||||||||||| || ||| | ||||||||||||| |||| || || | |||||||||| | || |
|
|
| T |
5763449 |
ttagatctatgagaatctctaaggtcaaggtgtgcaccaagtgttttaatattagtgatcaaagaatttcatgctttgaatatttgcaaactatacgcat |
5763548 |
T |
|
| Q |
132 |
ctacccttgaatatttgataacacttgcatatcaaataag |
171 |
Q |
| |
|
||| | ||||||||||| ||||||||||||||||||||| |
|
|
| T |
5763549 |
ctatacatgaatatttgaaaacacttgcatatcaaataag |
5763588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 5756439 - 5756522
Alignment:
| Q |
62 |
tgtgcaccaagtcttcaaatgtcagtgatcaaagaaattcaagcattaagcgtttgcaaactccatacacctacccttgaatat |
145 |
Q |
| |
|
|||||||||||| ||| ||| ||||||||||||||| ||||| |||| | ||||||||||| | |||||||| |||| |||| |
|
|
| T |
5756439 |
tgtgcaccaagtgttccaatatcagtgatcaaagaatttcaaacattgaatgtttgcaaactatagacacctacacttgcatat |
5756522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University