View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15526_low_1 (Length: 661)
Name: NF15526_low_1
Description: NF15526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15526_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 550; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 643
Target Start/End: Complemental strand, 41226742 - 41226112
Alignment:
| Q |
1 |
ttaagagattccatgttaacttcaacataatcatgaaagagagtacataagagagaaaccacactggatcatgatcatatactacattattgaatttcac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41226742 |
ttaagagattccatgttaacttcaacataatcatgaaagagag------------aaaccacactggatcatgatcatatactacattattgaatttcac |
41226655 |
T |
|
| Q |
101 |
tactaatactaaaactaagtgaccttggcaaaaggctcagaagaaagctctgctaccataaaacacgcgtgagttactactctttgaagattgtagtttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41226654 |
tactaatactaaaactaagtgaccttggcaaaaggctcagaagaaagctctgctaccataaaacacgcgtgagttactactctttgaagattgtagtttc |
41226555 |
T |
|
| Q |
201 |
tgttcagaagttgagtttcctgaactagttggtccattttcaaagtccataggaagcttcatttttgctaatgactcggtaaattgctgcatacttttca |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41226554 |
tgttcagaggttgagtttcctgaactagttggtccattttcaaagtccataggaagcttcatttttgctaatgactcggtaaattgctgcatacttttca |
41226455 |
T |
|
| Q |
301 |
agtacatgtctactatatcctgctgcaccatctttggctctggctcaatattcacactcacaacaggacttggaaatgactcattcagcaacgtgttcga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41226454 |
agtacatgtctactatatcctgctgcaccatctttggctctggctcaatattcacactcacaacaggacttggaaatgactcattcagcaacgtgttcga |
41226355 |
T |
|
| Q |
401 |
ggaatcactctcgccgtgtttgagatcaacannnnnnnnnnnngtacctgaaatttgctcctgattgggaggtttggtagcagcacgtgattttgagctt |
500 |
Q |
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| T |
41226354 |
ggaatcactctccccgtgtttgagatcaacatttttcttttttgtacctgaaatttgctcctgattgggaggtttagtagcagcacgtgattttgagctt |
41226255 |
T |
|
| Q |
501 |
gcagccactgaaggagaggaaacaactccattactactaggtggagattcaaccttaggaggttgaacagattcaacactacatactgagaagctttcca |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41226254 |
gcagccactgaaggagaggaaacaactccattactactaggtggagattcaaccttaggaggttgaacagattcaacactacatactgagaagctttcca |
41226155 |
T |
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| Q |
601 |
caagttgaacacctttttctgaactaagattttcagtatcagt |
643 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41226154 |
caagttgaacacctttttctgaactaagattttcagtatcagt |
41226112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 38998354 - 38998406
Alignment:
| Q |
240 |
tcaaagtccataggaagcttcatttttgctaatgactcggtaaattgctgcat |
292 |
Q |
| |
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|||| ||||||||||||||||||||| || || ||||||||||| || ||||| |
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| T |
38998354 |
tcaacgtccataggaagcttcattttcgccaaggactcggtaaactgttgcat |
38998406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 6e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 193 - 367
Target Start/End: Complemental strand, 22228457 - 22228286
Alignment:
| Q |
193 |
gtagtttttgttcagaagttgagtttcctgaactagttggtccattttcaaagtccataggaagcttcatttttgctaatgactcggtaaattgctgcat |
292 |
Q |
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||||||| || |||| | |||| ||||||||| |||||||| || |||| | ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22228457 |
gtagtttctgctcagtacttgaatttcctgaagtagttggttcactttcgatgtccataggaagcttcattttcgctaatgactcggtaaattgctgcat |
22228358 |
T |
|
| Q |
293 |
acttttcaagtacatgtctactatatcctgctgcaccatctttggctctggctcaatattcacactcacaacagg |
367 |
Q |
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|||||||| ||||||||| |||||||||||||| ||||||| ||||||||| ||||||||| |||||||||| |
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| T |
22228357 |
acttttcatgtacatgtcaactatatcctgctgaaccatctgcggctctggc---atattcacagtcacaacagg |
22228286 |
T |
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