View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15526_low_11 (Length: 215)

Name: NF15526_low_11

Description: NF15526

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15526_low_11

[»] chr8 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 186; E-Value: 1e-101

Query Start/End: Original strand, 12 - 201

Target Start/End: Original strand, 13854555 - 13854744

Alignment:

Q	12	tgaaatgaaaaatttagatatgtggaggaaggtttgccaacctagatgtaaagggggcctcggtgttagagatattagattggttaatgttagcctctta	111	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13854555	tgaaatgaaaaatttagatatgtggaggaaggtttgccaacctagatgtaaagggggcctcggtgttagagatattagattggttaatgttagcctctta	13854654	T

Q	112	gctaagtggtggtggcggctcctacaagatcaaccgtctttgtggaaagaggtgcttgaagatatttatggacctagggtgagttctagg	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13854655	gctaagtggtggtggcggctcctacaagatcaatcgtctttgtggaaagaggtgcttgaagatatttatggacctagggtgagttctagg	13854744	T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 34 - 104

Target Start/End: Complemental strand, 16663923 - 16663853

Alignment:

Q	34	tggaggaaggtttgccaacctagatgtaaagggggcctcggtgttagagatattagattggttaatgttag	104	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\| \|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	16663923	tggaggaaggtgtgtcaacctagaggtaaaggtgggcttggtgtgagagacattaaattggttaatattag	16663853	T

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