View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15526_low_2 (Length: 538)
Name: NF15526_low_2
Description: NF15526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15526_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 40 - 538
Target Start/End: Original strand, 37727377 - 37727878
Alignment:
| Q |
40 |
cgtatgctggagattagccacagaatttggcagtcaaattttcatcaaggtccagaaggaaacgtattcgacaaactaactgttttgaatgaataagaaa |
139 |
Q |
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| T |
37727377 |
cgtatgctggagattagccacagaatttggcagtcaaattttcatcaaggtccagaaggaaacgtattcgacaaactaactgttttgaatgaataagaaa |
37727476 |
T |
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| Q |
140 |
acaaccatatacattatacaagtttaaaatcgaaaaacaactttctcgttgactaggtttgaaatagtttcatttgcgatcaaaatttcactaaaaagca |
239 |
Q |
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| T |
37727477 |
acaaccatatacattatacaagtttaaaatcgaagaaccactttctcgttgactaggtttgaaatagtttcatttgcgatcaaaatttcactaaaaagca |
37727576 |
T |
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| Q |
240 |
aacagacaatcaatacctcttgtccaagtagctggagtgggaaatgcacaattacttgaattccacgtcaatacaaaaaggagagcccatagtttc---t |
336 |
Q |
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| T |
37727577 |
aacagacaatcaatacctcttgtccaagtagctggagtgggaaatgcacaattacttgaattccacgtcaatacaaaaaggaaagcccatagtttctgat |
37727676 |
T |
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| Q |
337 |
gaatcgaatacatataactattgttagctgataacacagttcaaggaaacaagtgctagactttttagctgaaatacatagaaatgaccaaattagcaaa |
436 |
Q |
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| T |
37727677 |
gaatcgaatacatataactattgttagctgataacacagttcaaggaaacaagtgctatactttttagctgaaattcatagaaatgaccaaattagcaaa |
37727776 |
T |
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| Q |
437 |
tttgactactactaaaccagacactcttcattaactcaatttgctaattactaccaattaacataaaggttagaaaaccaaaggcatatgatgcacatga |
536 |
Q |
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| T |
37727777 |
tttgactactactaaaccagacactcttcattaactaaatttgctaattactaccaattaacataaaggttagaaaaccaaaggcatatgatgcacatga |
37727876 |
T |
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| Q |
537 |
ac |
538 |
Q |
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| T |
37727877 |
ac |
37727878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 293 - 389
Target Start/End: Original strand, 15161306 - 15161402
Alignment:
| Q |
293 |
acttgaattccacgtcaatacaaaaaggagagcccatagtttctgaatcgaatacatataactattgttagctgataacacagttcaaggaaacaag |
389 |
Q |
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| T |
15161306 |
acttgaattccacatcaatacaaaaaggagaacctatagtttctgaatcaaatagatagaactattgttagcagagaacacagttcacagaaacaag |
15161402 |
T |
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