View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15526_low_3 (Length: 384)
Name: NF15526_low_3
Description: NF15526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15526_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 371
Target Start/End: Original strand, 5390405 - 5390758
Alignment:
| Q |
19 |
tgttaatatgaattattttatttgtcaataccgcagattggtgagttggctggacttgcagttggatctactgtgcttctaaatgttatgtttgccgggt |
118 |
Q |
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| T |
5390405 |
tgttaatatgaattatttgatttgtcaatactgcagattggtgagttggccggacttgcagttggatctactgtgcttctaaatgttatgtttgccgggt |
5390504 |
T |
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| Q |
119 |
atgaacctaactataaatcaaacctcaaactaaacatattgagaaatgtgagaaacatttgctttctaacactctttttaacactcactatcttatcgag |
218 |
Q |
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| T |
5390505 |
atgaacctaactatacatcaaacctcaaactaaacatattgagaaatgctagaaacattcgctgtttaacattctctttaacactcactctcttatcg-g |
5390603 |
T |
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| Q |
219 |
ggaactcatgtgaatcataccacttt--gtgatacccaattctaaagtgtgagacccatgtgaatttgatccaataagagagtaaatgttagagatgaca |
316 |
Q |
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| T |
5390604 |
ggaactcatgtgaatcacaccactttaggtgatactcaattctaaagtgtgagacccatatgagtttgatccaatgagagagtaaatgttagagatgaca |
5390703 |
T |
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| Q |
317 |
ttagaaaaaaggtgctcagatcatacctcaaatatagttagtggattcttttacg |
371 |
Q |
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| T |
5390704 |
ttagaaaaaaggtgctcagatcattcctcaaatatagttagtggatacttttacg |
5390758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 31 - 142
Target Start/End: Original strand, 5403964 - 5404075
Alignment:
| Q |
31 |
ttattttatttgtcaataccgcagattggtgagttggctggacttgcagttggatctactgtgcttctaaatgttatgtttgccgggtatgaacctaact |
130 |
Q |
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| T |
5403964 |
ttattttgtttgtcaataccacagattggtgagttggctggacttgcagttggatctaccgtgcttctaaatgttatgtttgctgggtatgaacctaact |
5404063 |
T |
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| Q |
131 |
ataaatcaaacc |
142 |
Q |
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| T |
5404064 |
ataattcaaacc |
5404075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 5406865 - 5406797
Alignment:
| Q |
52 |
cagattggtgagttggctggacttgcagttggatctactgtgcttctaaatgttatgtttgccgggtat |
120 |
Q |
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| T |
5406865 |
cagattggtgaattggctggacttgcagttggatctacagtcatgctaaatgtgttgtttgcagggtat |
5406797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 5398255 - 5398322
Alignment:
| Q |
53 |
agattggtgagttggctggacttgcagttggatctactgtgcttctaaatgttatgtttgccgggtat |
120 |
Q |
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| T |
5398255 |
agattggtgaattggctggacttgcagttggatctaccgttatactaaatgtgctgtttgcggggtat |
5398322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 36268798 - 36268866
Alignment:
| Q |
51 |
gcagattggtgagttggctggacttgcagttggatctactgtgcttctaaatgttatgtttgccgggta |
119 |
Q |
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| T |
36268798 |
gcagattggtgagttggctgggattgcagttggatctactgtacttttgaatgtgatgtttgcagggta |
36268866 |
T |
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