View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15526_low_4 (Length: 339)
Name: NF15526_low_4
Description: NF15526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15526_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 52438143 - 52438464
Alignment:
| Q |
8 |
atgcatataaacacactcccaaagagaatgttaggacttactaggaaattatgaggttaaactcagtccaaccatacgcaaatctggagatgatgttagg |
107 |
Q |
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| T |
52438143 |
atgcacataaactcactcccaaagagaatgttaggacttactaggaaattatgaggttaaactcagtccaaccatacgcaaatctggagatgatgttagg |
52438242 |
T |
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| Q |
108 |
acttgtaaggtaccttaatatcggtgatggtcaatatttctccttaattaccaatcaaatcatggcaccgagtcaaacatatctctattttcttttgctt |
207 |
Q |
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|||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52438243 |
acttgtaaggtaacttaatatcgatgatggtgaatatttctccttaattaccaatcaaatcatggcaccgagtcaaacatatctctattttcttttgctt |
52438342 |
T |
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| Q |
208 |
tgaattacttaatatcttcatcttaaggaaaatcttatggaagtgacataatatcaatattgcctnnnnnnnntaacataacatcaatatatggtgggta |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52438343 |
tgaattacttaatatcttcatcttaaggaaaatcttatggaagtgacataatatcaatattgcctaaaaaaaataacataacatcaatatatggtgggta |
52438442 |
T |
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| Q |
308 |
aactcataatcacaatttcatc |
329 |
Q |
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|||||||||||||||||||||| |
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| T |
52438443 |
aactcataatcacaatttcatc |
52438464 |
T |
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