View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15526_low_5 (Length: 330)
Name: NF15526_low_5
Description: NF15526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15526_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 39619946 - 39620245
Alignment:
| Q |
12 |
aatacttaggtgacattgagttttgatgacattagtgtgttttgaagagagagattactctataaatgattaaaacaaatcaatttgaatgagaatgatt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39619946 |
aatacttaggtgacattgagttttgatgacattagtgtgttttgaagagagagattgctctataaatgattaaaacaaatcaatttgaatgagaatgatt |
39620045 |
T |
|
| Q |
112 |
agttattagagatagacacaatgtcatcaatattgagttttgatgagattggtacacatttgggatcacatccaggggcggagccagccctagttgaggg |
211 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
39620046 |
agttattagagatagacacaatgccaccaatattgagttttgatgagattggtacacatttgggatcacatcgaggggcggagccaaccctagttgaggg |
39620145 |
T |
|
| Q |
212 |
tgtgcacctgcacaccttgaactttgaaaaattgcatctacaatcttatgttttcttgttttgaatcccgtgaaaaattagaattgcaccttgagtctct |
311 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39620146 |
tatgcacctgcacaccctgaactttgaaaaattgcatctacaatcttatgttttcttgttttgaatcccgtggaaaattagaattgcaccttgagtctct |
39620245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 24566455 - 24566404
Alignment:
| Q |
12 |
aatacttaggtgacattgagttttgatgacattagtgtgttttgaagagaga |
63 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||||||| |||||| |||||| |
|
|
| T |
24566455 |
aatacttggatgacattgagttttgattacattagtgtattttgatgagaga |
24566404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 28956215 - 28956137
Alignment:
| Q |
229 |
tgaactttgaaaaattgcatctacaatcttatgttttcttgttttgaatcccgtgaaaaattagaattgcaccttgagt |
307 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
28956215 |
tgaactttgaaaaattgcacctacaatcttatgttttcttgttttgaaccccctgaaaaattagtattgcaccttgagt |
28956137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 12804926 - 12804990
Alignment:
| Q |
243 |
ttgcatctacaatcttatgttttcttgttttgaatcccgtgaaaaattagaattgcaccttgagt |
307 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| | | ||||||||||| ||||||||||||| |
|
|
| T |
12804926 |
ttgcacctacaatcttatgttttcttgttttgaacctcctgaaaaattagtgttgcaccttgagt |
12804990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 8456687 - 8456649
Alignment:
| Q |
206 |
tgagggtgtgcacctgcacaccttgaactttgaaaaatt |
244 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8456687 |
tgagggtgtgcacctgcacaccctgaactttgaaaaatt |
8456649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 2466010 - 2466054
Alignment:
| Q |
12 |
aatacttaggtgacattgagttttgatgacattagtgtgttttga |
56 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| | |||||| |
|
|
| T |
2466010 |
aatacttaggtgacattgagatttgatgactttagtatattttga |
2466054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 14705658 - 14705717
Alignment:
| Q |
183 |
ccaggggcggagccagccctagttgagggtgtgcacctgcacaccttgaactttgaaaaa |
242 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||| |||||||| |||| ||| ||||| |
|
|
| T |
14705658 |
ccaggggcggatccagccctatgtgagggtgtgcacttgcacaccctgaattttcaaaaa |
14705717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 32799084 - 32799116
Alignment:
| Q |
210 |
ggtgtgcacctgcacaccttgaactttgaaaaa |
242 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
32799084 |
ggtgtgcacctgcacaccctgaactttgaaaaa |
32799116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University