View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15526_low_6 (Length: 266)

Name: NF15526_low_6
Description: NF15526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15526_low_6
NF15526_low_6
[»] chr7 (14 HSPs)
chr7 (72-248)||(22814668-22814844)
chr7 (72-204)||(22885310-22885442)
chr7 (75-188)||(22805019-22805132)
chr7 (72-204)||(22858144-22858276)
chr7 (72-188)||(22888993-22889109)
chr7 (72-188)||(22875623-22875739)
chr7 (72-189)||(22830731-22830848)
chr7 (72-189)||(22839752-22839869)
chr7 (75-248)||(22880233-22880405)
chr7 (75-204)||(22809326-22809455)
chr7 (75-188)||(22913375-22913488)
chr7 (115-247)||(22893595-22893727)
chr7 (115-209)||(22897952-22898046)
chr7 (115-244)||(22825903-22826032)
[»] chr1 (1 HSPs)
chr1 (75-203)||(21150900-21151028)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 72 - 248
Target Start/End: Complemental strand, 22814844 - 22814668
Alignment:
Q  72 agaatgtatgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttg 171  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||    
T  22814844 agaatgtatgttggattctcatcttcaacagggttacttgtagcttctcattatattcttgggtggagttttaaggttaatggccaagctcaaaaccttg 22814745  T
Q  172 aaatctctgaacttcctgagctaacaatatttgatgagnnnnnnnngtcaaaatttttaactgttgggttgcctttg 248  Q
    |||| |||||||||||| |||||||| |||||| ||||        ||| |||||||||||||||||||||||||||    
T  22814744 aaatatctgaacttcctaagctaacagtatttgctgaggtaaaaaagtctaaatttttaactgttgggttgcctttg 22814668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 22885442 - 22885310
Alignment:
Q  72 agaatgtatgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttg 171  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||    
T  22885442 agaatgtatgttggattctcatcttcaacagggttaattgtagcttctcattatattcttggttggagttttaaggttaatagccaagctcaaaaccttg 22885343  T
Q  172 aaatctctgaacttcctgagctaacaatatttg 204  Q
    ||||||||||||||||||||| || ||||||||    
T  22885342 aaatctctgaacttcctgagccaagaatatttg 22885310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 75 - 188
Target Start/End: Complemental strand, 22805132 - 22805019
Alignment:
Q  75 atgtatgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaa 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  22805132 atgtatgttggattctcatcttcaacagggttacttgcagcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaaccttgtaa 22805033  T
Q  175 tctctgaacttcct 188  Q
    ||||| || |||||    
T  22805032 tctctcaatttcct 22805019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 22858276 - 22858144
Alignment:
Q  72 agaatgtatgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttg 171  Q
    ||||||||||||||||||||||||||||| ||| || ||| |||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  22858276 agaatgtatgttggattctcatcttcaaccggggtaattgtagcttcccattatattcttggttggagttttaaggttaatggccaagctcaaaaccttg 22858177  T
Q  172 aaatctctgaacttcctgagctaacaatatttg 204  Q
    |||||||| ||||||||||||||| ||||||||    
T  22858176 aaatctctaaacttcctgagctaagaatatttg 22858144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 22889109 - 22888993
Alignment:
Q  72 agaatgtatgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttg 171  Q
    |||||||||||||||||||||||||||||||||||| | | ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22889109 agaatgtatgttggattctcatcttcaacagggttaatggtagcttctcagtatattcttggttggagttttaaggttaatggtcaagctcaaaaccttg 22889010  T
Q  172 aaatctctgaacttcct 188  Q
    |||||||||||||||||    
T  22889009 aaatctctgaacttcct 22888993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 22875739 - 22875623
Alignment:
Q  72 agaatgtatgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttg 171  Q
    |||||||||||||||||||||||||||||||| ||| ||  |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  22875739 agaatgtatgttggattctcatcttcaacaggtttaattttagcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaacccttg 22875640  T
Q  172 aaatctctgaacttcct 188  Q
    |||||||||||||||||    
T  22875639 aaatctctgaacttcct 22875623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 22830848 - 22830731
Alignment:
Q  72 agaatgtatgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttg 171  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||  |||||||||||||| ||||||||| ||| ||||||||||||    
T  22830848 agaatgtatgttggattctcatcttcaacagggttcattgcagcttctcattatattcatggttggagttttatggttaatggccaatctcaaaaccttg 22830749  T
Q  172 aaatctctgaacttcctg 189  Q
    |||||||||| |||||||    
T  22830748 aaatctctgaccttcctg 22830731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 22839869 - 22839752
Alignment:
Q  72 agaatgtatgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttg 171  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||  |||||||||||||| ||||||||| ||| ||||||||||||    
T  22839869 agaatgtatgttggattctcatcttcaacagggttcattgcagcttctcattatattcatggttggagttttatggttaatggccaatctcaaaaccttg 22839770  T
Q  172 aaatctctgaacttcctg 189  Q
    |||||||||| |||||||    
T  22839769 aaatctctgaccttcctg 22839752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 75 - 248
Target Start/End: Complemental strand, 22880405 - 22880233
Alignment:
Q  75 atgtatgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaa 174  Q
    |||||||||||||| |||||||||||| ||||| ||  ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  22880405 atgtatgttggattatcatcttcaacaaggttaattttagcttctcattatgttcttggttggagttttaaggttaatggtcaagctcaaaaccttgaaa 22880306  T
Q  175 tctctgaacttcctgagctaacaatatttgatgagnnnnnnnngtcaaaatttttaactgttgggttgcctttg 248  Q
    ||||||| |||| ||||| || | |||||| |||         |||||||||||||||||||||||| ||||||    
T  22880305 tctctgagcttcatgagccaatagtatttgctga-caaaaaaagtcaaaatttttaactgttgggttacctttg 22880233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 75 - 204
Target Start/End: Complemental strand, 22809455 - 22809326
Alignment:
Q  75 atgtatgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaa 174  Q
    ||||||||||||||||||||||||||||| |   ||  | ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |    
T  22809455 atgtatgttggattctcatcttcaacaggttctattctatcttctcattatgttcttggttggagttttaaggttaatggtcaagctcaaaaccttgata 22809356  T
Q  175 tctctgaacttcctgagctaacaatatttg 204  Q
    ||||| ||||||||||||||| || |||||    
T  22809355 tctctaaacttcctgagctaagaacatttg 22809326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 75 - 188
Target Start/End: Complemental strand, 22913488 - 22913375
Alignment:
Q  75 atgtatgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaa 174  Q
    ||||||||||||||||||||||||||||| | | ||  | |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||    
T  22913488 atgtatgttggattctcatcttcaacaggttcaattctaacttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaatcttgtaa 22913389  T
Q  175 tctctgaacttcct 188  Q
    ||||||||||||||    
T  22913388 tctctgaacttcct 22913375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 115 - 247
Target Start/End: Complemental strand, 22893727 - 22893595
Alignment:
Q  115 cttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctctgaacttcctgagctaacaatatttgatgagnnnnn 214  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| || || |||| | ||||         
T  22893727 cttctcattatattcttggttggagttttaagattaatggtcaagctcaaaaccttgtaatctctgaacttcctgagttaccagtattagctgagaaaac 22893628  T
Q  215 nnngtcaaaatttttaactgttgggttgccttt 247  Q
        ||||| |||||||||||||||||||||||    
T  22893627 gaaatcaaattttttaactgttgggttgccttt 22893595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 22898046 - 22897952
Alignment:
Q  115 cttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctctgaacttcctgagctaacaatatttgatgag 209  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| ||| ||||| ||||    
T  22898046 cttctcattatattcttggttggagttttaaggttaatggtcaagctgaaaaccttgtaatctctgaacttcctaagctaccaagatttggtgag 22897952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 115 - 244
Target Start/End: Complemental strand, 22826032 - 22825903
Alignment:
Q  115 cttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctctgaacttcctgagctaacaatatttgatgagnnnnn 214  Q
    |||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |||| ||| |||||||||||| | |||  || ||||| ||||         
T  22826032 cttctcattatattcttggttgaagttttaagcttaatggtcaagctcaaaatcttgtaatttctgaacttcctaaactacgaagatttggtgagaaaaa 22825933  T
Q  215 nnngtcaaaatttttaactgttgggttgcc 244  Q
       ||| |||||||||||||||||||||||    
T  22825932 agagtccaaatttttaactgttgggttgcc 22825903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 21150900 - 21151028
Alignment:
Q  75 atgtatgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaa 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |  ||||||||||||||||    
T  21150900 atgtatgttggattctcatcttcaacagggttacttgcagcttctcattatattcttggttggagttttaaggttaatggcctggctcaaaaccttgaaa 21150999  T
Q  175 tctctgaacttcctgagctaacaatattt 203  Q
    ||||||||||||||||  ||||| |||||    
T  21151000 tctctgaacttcctgaagtaacagtattt 21151028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University