View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15527_low_1 (Length: 599)
Name: NF15527_low_1
Description: NF15527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15527_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 486; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 4 - 587
Target Start/End: Complemental strand, 36525916 - 36525332
Alignment:
| Q |
4 |
tgctattaagatattaaagactataagggacgaagttaggcactgattattatatttatagagttaagagactgaataggagaaatggtaatagtttagg |
103 |
Q |
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| T |
36525916 |
tgctattaagatattaaagactataagggacgaagttaggcactgattattatatttatagagtttagagattgaataggagaaatggtaatagtttagg |
36525817 |
T |
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| Q |
104 |
gactaaattgataatttatttgaaaaatgaacttgggaaaggtacgaaggcaatccaccacactactgcaaatcgacaaattatagtacttaaaaacaat |
203 |
Q |
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| T |
36525816 |
gactaaattgataatttatttgaaaaatgaacttgggaaaggtacgaaggcaatccaccacactactgcaaatcgacaaattatagtacttaaaaacaat |
36525717 |
T |
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| Q |
204 |
taaggaacgtcaagccacagtacaggattaaaagttagtnnnnnnnnncacgagactaggatatgttctattttacacaggttgtgcaggaagaaaaaga |
303 |
Q |
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| T |
36525716 |
taaggaacgtcaagccacagtacaggattaaaagttggt-aaaaaaaacacgagactaggatatgttctattttacacaggttgtgcaggaagaaaaaga |
36525618 |
T |
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| Q |
304 |
tcatcattaagtaatggattaaatnnnnnnnncttgaggaattctgttttcctccactttttagaactggttttctta-ccctcattagcctaacatgcc |
402 |
Q |
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| T |
36525617 |
tcatcattaagtaatggattaaataaaaaaaacttgaggaattctgttttcctccactttttagaactggttttcttacccctcattagcctaacatgcc |
36525518 |
T |
|
| Q |
403 |
attatcttccattgttcaatctctcttttggttgtctcagtctcttacttccaacattttttgaggctcgtggcttcttaagtttggatttggacacagt |
502 |
Q |
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| T |
36525517 |
attatcttctattgttcaatctctcttttggttgtctcagtctcttacttccaacattttttgaggctcgtggcttcttaagtttggattttgacacagt |
36525418 |
T |
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| Q |
503 |
aaaacag-cccttcttactctttccacgattacttttagaggctggttttggcggagcctgcattcgagccttttttggggcacca |
587 |
Q |
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| T |
36525417 |
aaaacagccccttcttactctttccacgattacttttagaggctagttttggcggagcctgcattcgagcctttttcggggcacca |
36525332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 337 - 405
Target Start/End: Original strand, 26304319 - 26304391
Alignment:
| Q |
337 |
ttgaggaattctgttttcctccactttttaga--actggttttctta-ccctcattagc-ctaacatgccatt |
405 |
Q |
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| T |
26304319 |
ttgaggaattctgttttcctccagtttttagaatactggtgttcttacccctcataagctctaacatgccatt |
26304391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 523 - 587
Target Start/End: Complemental strand, 36531722 - 36531658
Alignment:
| Q |
523 |
ttccacgattacttttagaggctggttttggcggagcctgcattcgagccttttttggggcacca |
587 |
Q |
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| T |
36531722 |
ttccaccattacttttacaggctggttttggtggatcctgcgttggaacctttttcggggcacca |
36531658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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