View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15527_low_10 (Length: 213)
Name: NF15527_low_10
Description: NF15527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15527_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 4362677 - 4362497
Alignment:
| Q |
15 |
aagaaatagtccaagatttatgaaacttacacatgttttagtttcatgctggagttaaaaagtttctgtggtattggacctgagagtttattgttcccaa |
114 |
Q |
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| T |
4362677 |
aagaaatagtccaagatttatgaaacttacacatgttttagtttcatgctggagttaaaaagtttctgtggtattggacctgagagtttattgttcccaa |
4362578 |
T |
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| Q |
115 |
aatgactgcaaacaagtagacatagtattagatcattcaatgaaatgttagtatagaaattgaaaatgggagtagacatac |
195 |
Q |
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| T |
4362577 |
aatgactgcaaacaagtagacatagtattagatcattcaatgaaatgttagtatagaaattgaaaatgggagtagacatac |
4362497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 4344884 - 4344742
Alignment:
| Q |
18 |
aaatagtccaagatttatgaaacttacacatgttttagtttcatgctggagttaaaaagtttctgtggtattggacctgagagtttattgttcccaaaat |
117 |
Q |
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| T |
4344884 |
aaatagtactagatttatgaaacttacacatgttttagatgcatgctagagttaaaaagttttgttggtattggacctaagagtttattgttccccaagt |
4344785 |
T |
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| Q |
118 |
gactgcaaacaagtagacatagtattagatcattcaatgaaatg |
161 |
Q |
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| T |
4344784 |
cactgc-aagaagtagacataatatcagatcattgaatgaaatg |
4344742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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