View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15527_low_2 (Length: 510)
Name: NF15527_low_2
Description: NF15527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15527_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 47 - 486
Target Start/End: Complemental strand, 33782269 - 33781833
Alignment:
| Q |
47 |
agtggttgttgtctacctaaattggtccaaagaccaaattgagtttttattcaagaaactatatgttnnnnnnntaaatgcaattatgaatggtggcaaa |
146 |
Q |
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| T |
33782269 |
agtggttgttgtctacctaaatttgtccaaagaccaaattgagtttttattcaagaaactatatgttaaaaaaataaatgcaattatgaatggtggcaaa |
33782170 |
T |
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| Q |
147 |
tggtgtggggtgtttgtgcaaatggtgcgcgcacacacnnnnnnnnnnnnnnnnnagcaaagaaacacaacacaacgccattcactagtttgtgtttgta |
246 |
Q |
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|||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33782169 |
tggtgtggggtgtttgtgcaaatggtgcacacacacacatatatatatata----agcaaagaaacacaacacaacgccattcactagtttgtgtttgta |
33782074 |
T |
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| Q |
247 |
attcaaagtggtttttaaggtcctcttttttcttcattcttcttcaatttccaaaacatgggaaaacagagcaaagaaacagaatcccctgtttctgacc |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33782073 |
attcaaagtggtttttaaggtcctcttttttcttcattcttcttcaatttccaaaacatgggaaaacagagcaaagaaacagaatcccctgtttctgacc |
33781974 |
T |
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| Q |
347 |
caacaaaattctctatcctcaatcttatcgacctttcaaatccaaacataaaccaatccgttaatttactcaaacaggtttgtttcaatcacccttttca |
446 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33781973 |
caacaaaattctctatcctcaatcttatcgacctttcaaattcaaacataaaccaatccgttaatttactcaaacaggtttgtttcaatcacccttttca |
33781874 |
T |
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| Q |
447 |
ata-ttcattctcaaaaaacaacatgggtcaatttactctg |
486 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33781873 |
atatttcattctcaaaaaacaacatgggtcaatttactctg |
33781833 |
T |
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