View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15527_low_3 (Length: 438)

Name: NF15527_low_3
Description: NF15527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15527_low_3
NF15527_low_3
[»] chr1 (6 HSPs)
chr1 (205-426)||(6924719-6924944)
chr1 (18-178)||(6924532-6924692)
chr1 (292-399)||(47500794-47500902)
chr1 (286-402)||(30073988-30074106)
chr1 (46-124)||(6905910-6905988)
chr1 (309-402)||(6914186-6914282)
[»] chr5 (2 HSPs)
chr5 (300-400)||(10389156-10389258)
chr5 (286-323)||(20986108-20986145)
[»] chr2 (3 HSPs)
chr2 (287-401)||(21220838-21220954)
chr2 (345-402)||(36028601-36028658)
chr2 (288-328)||(6601474-6601514)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 205 - 426
Target Start/End: Original strand, 6924719 - 6924944
Alignment:
Q  205 cctttgtccctatttataaaaatgtcaaattttgttgtccattttataagaccctcttcaaatattaagtttacaagattcatcaattctctcttttaat 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6924719 cctttgtccctatttataaaaatgtcaaattttgttgtccattttataagaccctcttcaaatattaagtttacaagattcatcaattctctctcttaat 6924818  T
Q  305 aattgaaggataattttgagaagattgtacattgtttactaatttaatgcaagaacattttttcataattcttgtgcttttatcaaaagggtcttataaa 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6924819 aattgaaggataattttgagaagattgtacattgtttactaatttaatgcaagaacattttttcataattcttgtgcttttatcaaaagggtcttataaa 6924918  T
Q  405 tat----acggatgtagtttcatatt 426  Q
    |||    |||||||||||||||||||    
T  6924919 tatacggacggatgtagtttcatatt 6924944  T

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Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 6924532 - 6924692
Alignment:
Q  18 accattatgcacgatgcgtacactattaattacaagagttataattaacaaaacctaattcaacaatcaatcggcaacatgttgaggtatggctgcaatt 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6924532 accattatgcacgatgcgtacactactaattacaagagttataattaactaaacctaattcaacaatcaatcggcaacatgttgaggtatggctgcaatt 6924631  T
Q  118 caactttacgatacacttcattgtgtttaagatagacatgtgcgatgttttcatcagtaag 178  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6924632 caactttacgatacacttcattgtgtttaagatagacatgtgcaatgttttcatcagtaag 6924692  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 292 - 399
Target Start/End: Original strand, 47500794 - 47500902
Alignment:
Q  292 tctctcttttaataattgaaggataattttgaga--agattgtacattgtttactaatttaatgcaagaacattttttcataattcttgtgcttttatca 389  Q
    ||||||| ||||||||||||||||||||||||||  ||| | ||||||||| || |||||||||||| ||||  ||||| ||||||||||||||||||||    
T  47500794 tctctctcttaataattgaaggataattttgagaagagaatttacattgttgacaaatttaatgcaaaaaca-attttcttaattcttgtgcttttatca 47500892  T
Q  390 aaagggtctt 399  Q
    ||||||||||    
T  47500893 aaagggtctt 47500902  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 286 - 402
Target Start/End: Complemental strand, 30074106 - 30073988
Alignment:
Q  286 atcaattctctcttttaataattgaaggataattttg--agaagattgtacattgtttactaatttaatgcaagaacattttttcataattcttgtgctt 383  Q
    |||| |||||||| |||| || |||||||||| ||||  | |||| ||||  ||| | || |||||||||||||||||||||||| ||||||||||||||    
T  30074106 atcatttctctctcttaaaaaatgaaggataaatttggaaaaagaatgtatgttgctgacaaatttaatgcaagaacattttttcttaattcttgtgctt 30074007  T
Q  384 ttatcaaaagggtcttata 402  Q
    |||||||||||||||||||    
T  30074006 ttatcaaaagggtcttata 30073988  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 6905910 - 6905988
Alignment:
Q  46 attacaagagttataattaacaaaacctaattcaacaatcaatcggcaacatgttgaggtatggctgcaattcaacttt 124  Q
    ||||||||| || ||||||||||||||||||||||||| ||||| ||||||  ||||||||||||||||||| ||||||    
T  6905910 attacaagaattttaattaacaaaacctaattcaacaagcaatccgcaacacattgaggtatggctgcaattgaacttt 6905988  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 402
Target Start/End: Original strand, 6914186 - 6914282
Alignment:
Q  309 gaaggataattttgagaagattgtacattgtttactaatttaatgcaag---aacattttttcataattcttgtgcttttatcaaaagggtcttata 402  Q
    |||||||||||||||||||| ||||||||||||| || |||||| ||||   |||| |||||| |||||||||||  ||||| |||| |||||||||    
T  6914186 gaaggataattttgagaagaatgtacattgtttattagtttaatccaagaaaaacaatttttcttaattcttgtgtatttattaaaaaggtcttata 6914282  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 400
Target Start/End: Original strand, 10389156 - 10389258
Alignment:
Q  300 ttaataattgaaggataattttgaga-agattgtacattgtttactaatttaatgcaagaacattttttcataattcttgtgc-ttttatcaaaagggtc 397  Q
    |||||||||||||||||||||||| | |||  ||||||| || || |||||||| ||| ||||  ||||| |||||||||||| |||||||||  |||||    
T  10389156 ttaataattgaaggataattttgaaagagaacgtacattattaacaaatttaatacaaaaacaacttttcttaattcttgtgcattttatcaagggggtc 10389255  T
Q  398 tta 400  Q
    |||    
T  10389256 tta 10389258  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 323
Target Start/End: Original strand, 20986108 - 20986145
Alignment:
Q  286 atcaattctctcttttaataattgaaggataattttga 323  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  20986108 atcatttctctcttttaataattgaagaataattttga 20986145  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 401
Target Start/End: Complemental strand, 21220954 - 21220838
Alignment:
Q  287 tcaattctctcttttaataattgaaggataattttgagaagat--tgtacattgtttactaatttaatgcaagaacattttttcataattcttgtgcttt 384  Q
    |||| ||||||| |||||| ||| | ||||||||||  ||||   |||||||||||  | ||||||||||||   ||  ||||| ||||||||||| |||    
T  21220954 tcaaatctctctcttaatatttggaagataattttggaaagagagtgtacattgttggcaaatttaatgcaaactcaacttttcttaattcttgtgattt 21220855  T
Q  385 tatcaaaagggtcttat 401  Q
    |||||||||||||||||    
T  21220854 tatcaaaagggtcttat 21220838  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 402
Target Start/End: Complemental strand, 36028658 - 36028601
Alignment:
Q  345 aatttaatgcaagaacattttttcataattcttgtgcttttatcaaaagggtcttata 402  Q
    |||||||||||| |||  |||||| ||||  |||||||||||||||||||||||||||    
T  36028658 aatttaatgcaaaaactatttttcttaatcattgtgcttttatcaaaagggtcttata 36028601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 6601514 - 6601474
Alignment:
Q  288 caattctctcttttaataattgaaggataattttgagaaga 328  Q
    ||||||| ||| |||||||||||||||||||||||| ||||    
T  6601514 caattctatctcttaataattgaaggataattttgaaaaga 6601474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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