View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15527_low_4 (Length: 383)

Name: NF15527_low_4
Description: NF15527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15527_low_4
NF15527_low_4
[»] chr8 (7 HSPs)
chr8 (21-365)||(25391880-25392225)
chr8 (205-365)||(25358745-25358906)
chr8 (85-184)||(25617842-25617938)
chr8 (194-282)||(25650541-25650629)
chr8 (72-132)||(25650484-25650544)
chr8 (280-337)||(25650648-25650706)
chr8 (20-62)||(25617757-25617799)
[»] scaffold0466 (3 HSPs)
scaffold0466 (185-365)||(6511-6708)
scaffold0466 (72-165)||(7737-7827)
scaffold0466 (21-62)||(7872-7913)
[»] scaffold1041 (4 HSPs)
scaffold1041 (222-282)||(650-710)
scaffold1041 (21-62)||(823-864)
scaffold1041 (280-311)||(605-636)
scaffold1041 (161-193)||(708-740)


Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 21 - 365
Target Start/End: Original strand, 25391880 - 25392225
Alignment:
Q  21 attggtagccttatgcttttttagaagggtgtcgagtttatggattgttccctttttgtttcttatcttttgtagctgcttctaagtttgtgtatgcata 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25391880 attggtagccttatgcttttttagaagggtgtcgagtttatggattgttccctttttgtttcttatcttttgtagctgcttctaagtttgtgtatgcata 25391979  T
Q  121 atttgaaaagagacataaataatgtatggattatccattccctcatagatatctttaagtcatcgaggtgataagagctctgtgttgtcatagtggtatg 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25391980 atttgaaaagagacataaataatgtatggattatccattccctcatagatatctttaagtcatcaaggtgataagagctctgtgttgtcatagtggtatg 25392079  T
Q  221 aatactacatgtgcatatcacgatcctttccctcataatgtctacagaagtggaaaattttgttcaacttctctaaatttttcttcttcaaattctggaa 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25392080 aatactacatgtgcatatcacgatcctttccctcataatgtctacagaagtggaaaattttgttcaacttctctaaatttttcttcttcaaattctggaa 25392179  T
Q  321 gaaaacc-tattccttttggtgagtaataacgtctcactctccttc 365  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  25392180 gaaaaccgtattccttttggtgagtaataacgtctcactctccttc 25392225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 205 - 365
Target Start/End: Original strand, 25358745 - 25358906
Alignment:
Q  205 ttgtcatagtggtatgaatactacatgtgcatatcacgatcctttccctcataatgtctacagaagtggaaaattttgttcaacttctctaaatttttct 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25358745 ttgtcatagtggtatgaatactacatgtgcatatcacgatcctttccctcataatgtctacagaagtggaaaattttgttcaacttctctaaatttttct 25358844  T
Q  305 tcttcaaattctggaagaaaacc-tattccttttggtgagtaataacgtctcactctccttc 365  Q
    ||||||||||||||||| ||||| |||||||||| |||||||||||| ||||||| ||||||    
T  25358845 tcttcaaattctggaaggaaaccgtattccttttagtgagtaataacatctcactttccttc 25358906  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 85 - 184
Target Start/End: Original strand, 25617842 - 25617938
Alignment:
Q  85 atcttttgtagctgcttctaagtttgtgtatgcataatttgaaaagagacataaataatgtatggattatccattccctcatagatatctttaagtcatc 184  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||   | | |||||||||||||||||||||||||||||||||    
T  25617842 atcttttgtagctgcttctaagtttgtgtatgcataatttgaagagagacat-aataatg--cgaagtatccattccctcatagatatctttaagtcatc 25617938  T

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Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 25650541 - 25650629
Alignment:
Q  194 agagctctgtgttgtcatagtggtatgaatactacatgtgcatatcacgatcctttccctcataatgtctacagaagtggaaaattttg 282  Q
    |||||| ||||||||||||||| |||||||||||| |||||||||||| |||||||||||| ||||||||||| ||||||| |||||||    
T  25650541 agagctttgtgttgtcatagtgatatgaatactacgtgtgcatatcacaatcctttccctcctaatgtctacataagtggacaattttg 25650629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 25650484 - 25650544
Alignment:
Q  72 ctttttgtttcttatcttttgtagctgcttctaagtttgtgtatgcataatttgaaaagag 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25650484 ctttttgtttcttatcttttgtagctgcttctaagtttgtgtatgcataatttgaagagag 25650544  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 337
Target Start/End: Original strand, 25650648 - 25650706
Alignment:
Q  280 ttgttcaacttctctaaatttttcttcttcaaattctggaagaaaacc-tattcctttt 337  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  25650648 ttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattcctttt 25650706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 25617757 - 25617799
Alignment:
Q  20 aattggtagccttatgcttttttagaagggtgtcgagtttatg 62  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  25617757 aattggtagccttatgcttttttagaagggtgtcgagtttatg 25617799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 185 - 365
Target Start/End: Complemental strand, 6708 - 6511
Alignment:
Q  185 gaggtgataagagctctgtgttgtcatagtggtatgaatactacatgtgcatatcacgatcctttccctcataatgtctacagaagtggaaaatt----- 279  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||| |||| || ||||||||||||||||| ||||||||||||||||||| ||||         
T  6708 gaggtgataagagctatgtgttgtcatagtgatatggatactacgtgtgtatctcacgatcctttccctcctaatgtctacagaagtggacaattttggt 6609  T
Q  280 -----------ttgttcaacttctctaaatttttcttcttcaaattctggaagaaaacc-tattccttttggtgagtaataacgtctcactctccttc 365  Q
               ||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||  ||||||||||||||||| |||||||||    
T  6608 aagtgtgacacttgttcaacttctctaaatttttcttcttcaaattcttgaaggaaaccgtattcctttgagtgagtaataacgtctcgctctccttc 6511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 72 - 165
Target Start/End: Complemental strand, 7827 - 7737
Alignment:
Q  72 ctttttgtttcttatcttttgtagctgcttctaagtttgtgtatgcataatttgaaaagagacataaataatgtatggattatccattccctca 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||  |||||||||||||||||||    
T  7827 ctttttgtttcttatcttttgtagctgcttctaagtttgtgtatgcataatttgaagagagacat-aataatg--tggattatccattccctca 7737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 7913 - 7872
Alignment:
Q  21 attggtagccttatgcttttttagaagggtgtcgagtttatg 62  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  7913 attggtagccttaggcttttttagaagggtgtcgagtttatg 7872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1041 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 710 - 650
Alignment:
Q  222 atactacatgtgcatatcacgatcctttccctcataatgtctacagaagtggaaaattttg 282  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  710 atactacgtgtgcatatcacgatcctttccctcctaatgtctacagaagtggaaaattttg 650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1041; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 864 - 823
Alignment:
Q  21 attggtagccttatgcttttttagaagggtgtcgagtttatg 62  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  864 attggtagccttatgcttttttagaagggtgtcgagtttatg 823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1041; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 311
Target Start/End: Complemental strand, 636 - 605
Alignment:
Q  280 ttgttcaacttctctaaatttttcttcttcaa 311  Q
    ||||||||||||||||||||||||||||||||    
T  636 ttgttcaacttctctaaatttttcttcttcaa 605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1041; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 740 - 708
Alignment:
Q  161 cctcatagatatctttaagtcatcgaggtgata 193  Q
    ||||||||| |||||||||||||||||||||||    
T  740 cctcatagagatctttaagtcatcgaggtgata 708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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