View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15527_low_5 (Length: 369)
Name: NF15527_low_5
Description: NF15527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15527_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 11104907 - 11104680
Alignment:
| Q |
5 |
aagtaagccattgaggttttgaagattggagtaatatttgttatcaaagtgatcaggtgtggtaaggtccaaattggctaggttgtttcctgctgaattt |
104 |
Q |
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| T |
11104907 |
aagtaagccattgaggttttgaagattggagtaatatttgttatcaaagtgattaggtgtggtaaggtccaaattggctaggttgtttcctgttgaattt |
11104808 |
T |
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| Q |
105 |
tggggacatatcagacgcaatgtttgtaagtaagttgtgtttaatgttggatcaggatttccagtgccactgaaattgtatagacggttgatgaatgcac |
204 |
Q |
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| T |
11104807 |
tggggacatatcagacgcaatgtttgtaagtaagttgtgtttaatgttggatcaggatttccagtgccactgaaattgtatagacggttgatgaatgcac |
11104708 |
T |
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| Q |
205 |
tgcaacgagctcttccaaatgtatgagc |
232 |
Q |
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| T |
11104707 |
tgcaacgagctcttccaaatgtatgagc |
11104680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 9 - 237
Target Start/End: Complemental strand, 11097886 - 11097658
Alignment:
| Q |
9 |
aagccattgaggttttgaagattggagtaatatttgttatcaaagtgatcaggtgtggtaaggtccaaattggctaggttgtttcctgctgaattttggg |
108 |
Q |
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| T |
11097886 |
aagcctttgtggctttgaagattggagtagaatttgttgtcaaattgatttggtgtagtaaggtccaaattggtgagattgttccctgttccattttggg |
11097787 |
T |
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| Q |
109 |
gacatatcagacgcaatgtttgtaagtaagttgtgtttaatgttggatcaggatttccagtgccactgaaattgtatagacggttgatgaatgcactgca |
208 |
Q |
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| T |
11097786 |
gacatatctcacgcaatgtttgtaagtaagttgtgtttagagtttgatcaggatttccagtgctattgaaattgtataaacgattaatgaaggtgctaca |
11097687 |
T |
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| Q |
209 |
acgagctcttccaaatgtatgagcccctg |
237 |
Q |
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| T |
11097686 |
cttagctcttccaaatgtatgagcacctg |
11097658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 186
Target Start/End: Complemental strand, 11178887 - 11178822
Alignment:
| Q |
121 |
gcaatgtttgtaagtaagttgtgtttaatgttggatcaggatttccagtgccactgaaattgtata |
186 |
Q |
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| T |
11178887 |
gcaatgtttgcaagtaagttgtgttaagggttgaatcgggatttccagtgttgctgaaattgtata |
11178822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 11172784 - 11172720
Alignment:
| Q |
122 |
caatgtttgtaagtaagttgtgtttaatgttggatcaggatttccagtgccactgaaattgtata |
186 |
Q |
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| T |
11172784 |
caatgtttgtaagtaggttgtgttgagagttggatcgggatttccagtattgctgaaattgtata |
11172720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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