View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15527_low_6 (Length: 286)
Name: NF15527_low_6
Description: NF15527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15527_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 36360694 - 36360966
Alignment:
| Q |
1 |
gacgatagtgaatgagaggaggaaatgtcttaggagggccattatagttaatttcttccctttgtatt---atactatattgagaaatatatatagatgt |
97 |
Q |
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| T |
36360694 |
gacgatagtgaatgagaggaggaaatgtcttaggagggccattatagttaatttcttccctttgtattattatactatattgagaaatatatatagatgt |
36360793 |
T |
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| Q |
98 |
actttgaaaggtgaagaataataattgtttgatgagaatatatatatttagcaaaagctatgtatcgaggtatggaacttaggannnnnnntgattgtgt |
197 |
Q |
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| T |
36360794 |
actttgaaaggtgaagaataataattgtttgatgagaatatatatatttagcaaaagctatgtatcgaggtatggaacttagga-ggggggtgattgtgt |
36360892 |
T |
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| Q |
198 |
atttatagacaaggaaattaaaaagagcatgtttgcttttcatatttaaatatatcccacatatggttatatat |
271 |
Q |
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| T |
36360893 |
atttatagacaaggaaattaaaaagagcatgtttgcttttcatatttaaatatatcccacatatggttatatat |
36360966 |
T |
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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 36349328 - 36349390
Alignment:
| Q |
1 |
gacgatagtgaatgagaggaggaaatgtcttaggagggccattatagttaatttcttcccttt |
63 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
36349328 |
gacgatagtggatgagaggaggaaatgtcttaggagagccattatagttaatttcctcccttt |
36349390 |
T |
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