View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15527_low_8 (Length: 250)
Name: NF15527_low_8
Description: NF15527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15527_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 37930172 - 37930369
Alignment:
| Q |
19 |
gaacaaagaaagcatgggaaagtgagttgcaaaagctcgaaaagcttcctgatcttaaaactttcaaagtgttgaagttaagttatgatgaacttgacga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37930172 |
gaacaaagaaagcatgggaaagtgagttgcaaaagctcgaaaagcttcctgatcttaaaactttcaaagtgttgaagttaagttatgatgaacttgacgg |
37930271 |
T |
|
| Q |
119 |
cgaacaaaaggatatatttgttgacatagcttgtttctatagaggacacttggagaatgttgtagcacaaacattggattcttgtggtttctgtgctc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37930272 |
cgaacaaaaggatatatttgttgacatagcttgtttctatagaggacacttggagaatgttgtagcacaaacattggattcttgtggtttctctgctc |
37930369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 210
Target Start/End: Complemental strand, 44644224 - 44644036
Alignment:
| Q |
22 |
caaagaaagcatgggaaagtgagttgcaaaagctcgaaaagcttcctgatcttaaaactttcaaagtgttgaagttaagttatgatgaacttgacgacga |
121 |
Q |
| |
|
||||| |||||||||||||| |||| |||||||| || ||||||||||| | | | |||| ||||| |||| || ||||||| |||||||| || || |
|
|
| T |
44644224 |
caaaggaagcatgggaaagtcagttacaaaagctggataagcttcctgagaatgacattttcgaagtgctgaaattgagttatgtagaacttgatgaaga |
44644125 |
T |
|
| Q |
122 |
acaaaaggatatatttgttgacatagcttgtttctatagaggacacttggagaatgttgtagcacaaacattggattcttgtggtttct |
210 |
Q |
| |
|
||| || || |||||| |||| ||||||||||||||||||||||| |||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
44644124 |
acagaatgagatatttcttgatatagcttgtttctatagaggacatttggagaatgttgttttacaaacactggatagttgtggtttct |
44644036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 37957402 - 37957220
Alignment:
| Q |
28 |
aagcatgggaaagtgagttgcaaaagctcgaaaagcttcctgatcttaaaactttcaaagtgttgaagttaagttatgatgaacttgacgacgaacaaaa |
127 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||| | || | ||| ||||| | ||| ||||| |||||||||| ||||||| |||| ||||| |
|
|
| T |
37957402 |
aagcatgggaaagtcatttgcaaaagctcgaaaagctttcccatgatgaaattttcagtgcgttcaagttgagttatgatggacttgacaacgagcaaaa |
37957303 |
T |
|
| Q |
128 |
ggatatatttgttgacatagcttgtttctatagaggacacttggagaatgttgtagcacaaacattggattcttgtggtttct |
210 |
Q |
| |
|
|||||||||| ||||||||||||| || ||||||||| | | ||||| ||||| ||||||||||||| ||||||||||| |
|
|
| T |
37957302 |
ggatatatttcttgacatagcttgcttttatagaggagaacttgagaaccgtgtagttcaaacattggattattgtggtttct |
37957220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 25721766 - 25721951
Alignment:
| Q |
30 |
gcatgggaaagtgagttgcaaaagctcgaaaagcttcctgatcttaaaactttcaaagtgttgaagttaagttatgatgaacttgacgacgaacaaaagg |
129 |
Q |
| |
|
|||||||||||||| ||||||||| | || || |||||||| | ||||| ||||||||||| ||||||||||| ||||| ||| ||| ||| |
|
|
| T |
25721766 |
gcatgggaaagtgaattgcaaaagttgcaagagtttcctgatgaggatacttttaaagtgttgaaattaagttatgactcgcttgatgaccgacagaaga |
25721865 |
T |
|
| Q |
130 |
atatatttgttgacatagcttgtttctatagaggacacttggagaatgttgtagcacaaacattggattcttgtggtttctgtgct |
215 |
Q |
| |
|
|||| ||| ||||||| ||||| ||||||| ||||| |||| ||||| ||| |||| |||| | ||| ||||||||||| |||| |
|
|
| T |
25721866 |
atatgtttcttgacatcgcttgcttctatactggacatttggtgaatgatgttgcacgaacactagatagttgtggtttctctgct |
25721951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 19869499 - 19869575
Alignment:
| Q |
90 |
ttgaagttaagttatgatgaacttgacgacgaacaaaaggatatatttgttgacatagcttgtttctatagaggaca |
166 |
Q |
| |
|
||||| |||||||| |||| ||||| || || || |||||||||||| ||||||||||||| |||| ||| ||||| |
|
|
| T |
19869499 |
ttgaaattaagttacgatgggcttgatgatgagcagaaggatatatttcttgacatagcttgcttctgtaggggaca |
19869575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University