View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15528_high_3 (Length: 472)
Name: NF15528_high_3
Description: NF15528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15528_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 161 - 463
Target Start/End: Original strand, 7101168 - 7101470
Alignment:
| Q |
161 |
tatttgatctagtagcaagtgtatggaaaaatataataccattaccaaggaaagtcaataaaagacatcaatagtaatagacatcaataaatgtgtgcga |
260 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7101168 |
tatttgatctagtagcaagtgcatggaaaaatataataccattaccaaggaaagtcaataaaagacatcaatagtaatagacatcaataaatgtgtgcaa |
7101267 |
T |
|
| Q |
261 |
gag-aaccatgtaccttcccgttttgaggatccaccagcagtccctctaagttatctccaacaacagtcattagtttgcggtcaggactgatcgatgtgt |
359 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7101268 |
gaggaaccatgtaccttcccgttttgaggatccaccagcagtccctctaagttatctccaacgacagtcattagtttgcggtcaggactgatcgatgtgt |
7101367 |
T |
|
| Q |
360 |
gctgcatcaagagtaaaatactttgcaatcaatgtgtgtaaaattaaaaatcacaaatatttttaaaagtgaagcaaaatatccaatcaaaacagcatat |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7101368 |
gctgcatcaagagtaaaatactttgcaatcaatgtgtgtaaaatt-aaaatcacaaatatttttaaaagtgaagcaaaatatccaatcaaaacagcattt |
7101466 |
T |
|
| Q |
460 |
tctt |
463 |
Q |
| |
|
|||| |
|
|
| T |
7101467 |
tctt |
7101470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 7101024 - 7101111
Alignment:
| Q |
18 |
cttttcgggaggttgggg-atttacaatatccaagtgcccgataagaaactaatcatctcgacaatcatatccatcactctcacaccc |
104 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7101024 |
cttttcgggaggttgggggatttacaatatccaagtgcccgataagaaactaatcatctcgacaatcatatccatcactctcacaccc |
7101111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University