View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15528_high_4 (Length: 350)
Name: NF15528_high_4
Description: NF15528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15528_high_4 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 38708775 - 38708444
Alignment:
| Q |
19 |
ccattaacatggaccaatgaccattgaattttggtatcgctagttgttggaaaatgcctgtttccgtcatgatcattcttcaattgctttctatcccact |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38708775 |
ccattagcatggaccaatgaccattgaattttggtatcgctagttgttggaaaatgcctgtttccgtcatgatcattcttcaattgctttctatcccact |
38708676 |
T |
|
| Q |
119 |
tacttaacacactcaaaaactgcggttttatttgatcaggagaaagcaatccaagtactttcatcgatcataatcattttatacatgcacaaaacagtta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38708675 |
tacttaacacactcaaaaactgcggttttatttgatcaggagaaagcaatccaagtactttcatcgatcataataattttatacatgcacaaaacagtta |
38708576 |
T |
|
| Q |
219 |
ttgagtaggaaaaattaaatctgaagctaactcagcaaaaacattacaattgagctagcaactaagattacaatcacggcccaatagggccaaagctaaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38708575 |
ttgagtaggaaaaattaaatctgaagctaactcagcaaaaacattacaattgagctagtaactaagattacaatcacagcccaatagggccaaagctaaa |
38708476 |
T |
|
| Q |
319 |
gtactatcaacattgctctacacttggaaatt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38708475 |
gtactatcaacattgctctacacttggaaatt |
38708444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University