View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15528_high_7 (Length: 256)
Name: NF15528_high_7
Description: NF15528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15528_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 41259100 - 41258872
Alignment:
| Q |
16 |
attgagtaaataaatataatagtagcaatttatttgtaaggacatttgaaagaaaaatacttgactgaaaatcaagaaataaaatacttctcggttgttg |
115 |
Q |
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| T |
41259100 |
attgtgtaaataaatataatagtagcaatttatttggaaggacatttgaaagaaaaatacttgactgaaaatcaagaaataaaatacttctcggttgttg |
41259001 |
T |
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| Q |
116 |
ataagcaattttaactaccaagacaagagatagatnnnnnnntatgtatatatattatgaatctgcttgtttaataattttagagcaaaattatgcctaa |
215 |
Q |
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| T |
41259000 |
ataagcaattttaactactaagacaagagatagataaaaaaa-ataaaaata-attatgaatctgcttgtttaataattttagagcaaaattatgcctaa |
41258903 |
T |
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| Q |
216 |
tataaatgtagaaaatttctattctggtgag |
246 |
Q |
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| T |
41258902 |
tataaatgtagaaaatttctattctggtgag |
41258872 |
T |
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