View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15528_low_2 (Length: 538)
Name: NF15528_low_2
Description: NF15528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15528_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 18 - 530
Target Start/End: Complemental strand, 40196044 - 40195531
Alignment:
| Q |
18 |
aactattaggcattagccatcaagagaaagccactcaccgggcgaccgaatttagacaattgtgctggtttagctctccgttgtccaggataaccttaaa |
117 |
Q |
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| T |
40196044 |
aactattaggcattagccatcaagagaaagccactcaccgggcgaccaaatttagataattgtgctggtttagctctccgttgtccaggataaccttaaa |
40195945 |
T |
|
| Q |
118 |
attacaacaagaaaaagtaaaactaaaatgacatgagtaagaaaactgttattaagattcagattgtaaattgaggatacattttgacataatttatcgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40195944 |
attacaacaagaaaaagtaaaactaaaatgacatgagtaagaaaactgttattaagattcagattgtaaattgaggatacattttgacataatttatcat |
40195845 |
T |
|
| Q |
218 |
tgaaagatctagcacatgaaagataaaaaatcaagtatgtttgtgaaagagagaacaca-tttattttcaaaatgaaatacctgtaaaaattataacacc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
40195844 |
tgaaagatctagcacatgaaagataaaaaatcaagtatgtttgtgaaagagagaacacattttattttcaaaatgaaatacctgtaaaaataataacacc |
40195745 |
T |
|
| Q |
317 |
atctgcagatactcttacaagctcaggaagagttttgtttaaatattttggagacatgtaatccaaagcatctgatactataacatgtgaaaaagacttt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40195744 |
atctgcagatactcttacaagctcaggaagagttttgtttaaatattttggagacatgtaatccaaagcatctgatactataacatgtgaaaaagacttt |
40195645 |
T |
|
| Q |
417 |
ggtctatatggtagaggaaatttaatatcagcaacacgtataatgcctttatggactaaagccttgcaattcttatcaacatcttctatgtcatatggct |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40195644 |
ggtctatatggtagaggaaatttaatatcagcaacacgtataatgcctttatggactaaagccttgcaattcttatcaacatcttctatgtcatatggct |
40195545 |
T |
|
| Q |
517 |
ccacaccctatgct |
530 |
Q |
| |
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|||||||| ||||| |
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| T |
40195544 |
ccacaccccatgct |
40195531 |
T |
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