View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15528_low_4 (Length: 396)
Name: NF15528_low_4
Description: NF15528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15528_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 2 - 380
Target Start/End: Original strand, 37118744 - 37119122
Alignment:
| Q |
2 |
agcagcacagaatataaacccacacaaaaccacaaccaaaaataacgaaaccattttttaatttatgcacatatatgcatgctaccttaaacatatacat |
101 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37118744 |
agcatcacaaaatataaacccacacaaaaccacaaccaaaaataacgaaaccattttttaatttatgcacatatatgcatgctaccttaaacatatacat |
37118843 |
T |
|
| Q |
102 |
attaaattatcaattggaaacaggtgcaaaactagaatcttgctcgacagcaccctgctccatcttgttccattgcttcgcaaccttctgatcagaacca |
201 |
Q |
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| T |
37118844 |
attaaattatcaattggaaacaggtgcaaaactagaatcttgctcgacagcaccctgctccatcttgttccattgcttcgcaaccttctgatcagaacca |
37118943 |
T |
|
| Q |
202 |
tgactatgtatactctgatcaaattcttttgcagtgtcatatgaagcaggtaaccccaatagcacatagtataccaagagaaaccccgtccaaatcgtaa |
301 |
Q |
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| T |
37118944 |
tgactatgtatactctgatcaaattcttttgcagtgtcatatgaagcatgtaaccccaatagcacatagtataccaagagaaaccccgtccaaatcgtaa |
37119043 |
T |
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| Q |
302 |
tcctaatatacgattttttatcaatagttccaagaaggaatatgttgatagcaatagataaagaaggtagccaaggaac |
380 |
Q |
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| T |
37119044 |
accttatatacgattttttatcaatagttccaagaaggaatatgttgatagcaatggataaagaaggtagccaaggaac |
37119122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 132 - 380
Target Start/End: Original strand, 37110622 - 37110870
Alignment:
| Q |
132 |
actagaatcttgctcgacagcaccctgctccatcttgttccattgcttcgcaaccttctgatcagaaccatgactatgtatactctgatcaaattctttt |
231 |
Q |
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|||||| ||||||| ||||||||||||||||| ||||||| |||||||| |||||| | ||||||||||| ||||||| ||||||||||||| |||||| |
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| T |
37110622 |
actagagtcttgcttgacagcaccctgctccaccttgttcaattgcttctcaacctccggatcagaaccactactatgtttactctgatcaaactctttt |
37110721 |
T |
|
| Q |
232 |
gcagtgtcatatgaagcaggtaaccccaatagcacatagtataccaagagaaaccccgtccaaatcgtaatcctaatatacgattttttatcaatagttc |
331 |
Q |
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|| ||||||||||||||| |||||||||||| |||||||||||| | ||||||||| |||||||||| || ||| |||||||||||| ||||||||| || |
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| T |
37110722 |
gctgtgtcatatgaagcatgtaaccccaataacacatagtatacaaggagaaaccctgtccaaatcgcaaaccttatatacgattttctatcaatagatc |
37110821 |
T |
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| Q |
332 |
caagaaggaatatgttgatagcaatagataaagaaggtagccaaggaac |
380 |
Q |
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| T |
37110822 |
caagaaggaatatgttaatagcaatggataaagaaggtagccaaggaac |
37110870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 318 - 381
Target Start/End: Complemental strand, 37137187 - 37137124
Alignment:
| Q |
318 |
tttatcaatagttccaagaaggaatatgttgatagcaatagataaagaaggtagccaaggaact |
381 |
Q |
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||||||||||| ||||||||||||||| || ||||||||||| |||||||||| |||||||||| |
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| T |
37137187 |
tttatcaatagatccaagaaggaatatattaatagcaatagaaaaagaaggtaaccaaggaact |
37137124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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