View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15528_low_9 (Length: 263)
Name: NF15528_low_9
Description: NF15528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15528_low_9 |
 | |
|
| [»] scaffold0067 (1 HSPs) |
| | |
|
| [»] scaffold0912 (1 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 24)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 28128245 - 28128011
Alignment:
| Q |
18 |
ccttccccacttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28128245 |
ccttccccacttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctc |
28128146 |
T |
|
| Q |
118 |
tttgtatttggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatccttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28128145 |
tttgtatttggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatccttt |
28128046 |
T |
|
| Q |
218 |
ccagtttcaatcaatcttttaatttgctccttctt |
252 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28128045 |
ccattttcaatcaatcttttaatttgctccttctt |
28128011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 28142176 - 28141942
Alignment:
| Q |
18 |
ccttccccacttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctc |
117 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28142176 |
ccttccccacttttttggccaatgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctc |
28142077 |
T |
|
| Q |
118 |
tttgtatttggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatccttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28142076 |
tttgtatttggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatccttt |
28141977 |
T |
|
| Q |
218 |
ccagtttcaatcaatcttttaatttgctccttctt |
252 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28141976 |
ccattttcaatcaatcttttaatttgctccttctt |
28141942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 28045729 - 28045495
Alignment:
| Q |
18 |
ccttccccacttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctc |
117 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
28045729 |
ccttacccacttctttggccaatgtagtttttcctgtgccccccatcccttgcaacctggttatataattgttgtcatctttcagagcatctaaaagctc |
28045630 |
T |
|
| Q |
118 |
tttgtatttggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatccttt |
217 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
28045629 |
tttgtatttgaattccctactttcaaaagaaatatagtgtttggatgaataacgttcaacatctggaagatgaccagggagtccaattacaagatccttt |
28045530 |
T |
|
| Q |
218 |
ccagtttcaatcaatcttttaatttgctccttctt |
252 |
Q |
| |
|
| ||||||||| ||| ||||||||| ||||||||| |
|
|
| T |
28045529 |
ctagtttcaattaattttttaattttctccttctt |
28045495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 28474119 - 28474353
Alignment:
| Q |
18 |
ccttccccacttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctc |
117 |
Q |
| |
|
|||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| |
|
|
| T |
28474119 |
ccttacccacttctatggacattgtagtttttcctgtgccccccatcccttgcaacccggttataaaattgttgtcatctttcagagcatctaaaagctc |
28474218 |
T |
|
| Q |
118 |
tttgtatttggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatccttt |
217 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||||||| | ||||||||| |||||||||||||||||| ||||||||| ||||||| ||| |||||| |
|
|
| T |
28474219 |
tttgtatttggattccctacttttaaaaggaatatagtgttgggatgaatagcgttcaacatctggaagacgagcagggaatccaatttgaagttccttt |
28474318 |
T |
|
| Q |
218 |
ccagtttcaatcaatcttttaatttgctccttctt |
252 |
Q |
| |
|
||||||| |||||||||| |||| ||||||||||| |
|
|
| T |
28474319 |
ccagtttgaatcaatcttgtaatctgctccttctt |
28474353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 27466173 - 27466399
Alignment:
| Q |
18 |
ccttccccacttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctc |
117 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||| |
|
|
| T |
27466173 |
ccttacccacttctttggccaatgtagtttttcctgtgccccccatcccttgcaacccggttatataattgttgcaatctttcagagcatctaaaagctc |
27466272 |
T |
|
| Q |
118 |
tttgtatttggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatccttt |
217 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||||||| || |||||||||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
27466273 |
tttgtatttggattccctactttcaaaagaaatatagtgagaagatgaataacgctcgacatctggaagacgagcagggagtccaattgcaagttccttt |
27466372 |
T |
|
| Q |
218 |
ccagtttcaatcaatcttttaatttgc |
244 |
Q |
| |
|
| ||||||||||| ||||||||||| |
|
|
| T |
27466373 |
ctagtttcaatcagctttttaatttgc |
27466399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 26 - 252
Target Start/End: Complemental strand, 28176329 - 28176103
Alignment:
| Q |
26 |
acttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatt |
125 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||| ||||||| ||| |||| ||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
28176329 |
acttctttggccaatgtagtttttcctgtgccccccattcctttcaacccgattacataattgttgtcatctttcaatgcatccaaaagctctttgtatt |
28176230 |
T |
|
| Q |
126 |
tggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttc |
225 |
Q |
| |
|
|||||| ||||||| ||||| |||||||| | ||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
28176229 |
tggattccctacttttaaaaggaatatagtgttgggatgaataacgttcaacacctggaagacgagcagggagtccaattgaaagttcctttccagtttc |
28176130 |
T |
|
| Q |
226 |
aatcaatcttttaatttgctccttctt |
252 |
Q |
| |
|
||| ||||||||||||||||||||||| |
|
|
| T |
28176129 |
aattaatcttttaatttgctccttctt |
28176103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 26 - 252
Target Start/End: Original strand, 28499579 - 28499805
Alignment:
| Q |
26 |
acttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatt |
125 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
28499579 |
acttctctggccaatgtagtttttcctgtgccccccatcccttgcaacccggttataaaattgttgtcatctttcatagcatctaaaagctctttgtatt |
28499678 |
T |
|
| Q |
126 |
tggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttc |
225 |
Q |
| |
|
|||||| ||||||| ||||| |||||||| | |||||||||||||||||||||||||||| | ||||||||| ||||| ||| | |||||||||||| |
|
|
| T |
28499679 |
tggattccctacttttaaaaggaatatagtgttgggatgaataacgttcaacatctggaagacgggcagggagttcaattgaaagttgctttccagtttc |
28499778 |
T |
|
| Q |
226 |
aatcaatcttttaatttgctccttctt |
252 |
Q |
| |
|
||| |||||||| |||||||||||||| |
|
|
| T |
28499779 |
aattaatcttttcatttgctccttctt |
28499805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 26 - 252
Target Start/End: Complemental strand, 28077706 - 28077480
Alignment:
| Q |
26 |
acttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatt |
125 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||| ||||||| ||| |||| ||||||||||||||| ||||| ||||||||||||| || |
|
|
| T |
28077706 |
acttctttggccaatgtagtttttcctgtgccccccattcctttcaacccgattacataattgttgtcatctttcaatgcatccaaaagctctttgtgtt |
28077607 |
T |
|
| Q |
126 |
tggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttc |
225 |
Q |
| |
|
|||||| ||||||| ||||| |||||||| | ||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
28077606 |
tggattccctacttttaaaaggaatatagtgttgggatgaataacgttcaacacctggaagacgagcagggagtccaattgaaagttcctttccagtttc |
28077507 |
T |
|
| Q |
226 |
aatcaatcttttaatttgctccttctt |
252 |
Q |
| |
|
||| ||||||||||||||||||||||| |
|
|
| T |
28077506 |
aattaatcttttaatttgctccttctt |
28077480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 27996921 - 27996687
Alignment:
| Q |
18 |
ccttccccacttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctc |
117 |
Q |
| |
|
|||| ||||||||| |||||||| |||||||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||| || || |||||||| |
|
|
| T |
27996921 |
ccttacccacttctatggccattctagtttttcctgtgccccccatccctatcaacccgattacataattgttgtcatctttcaatgcttccaaaagctc |
27996822 |
T |
|
| Q |
118 |
tttgtatttggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatccttt |
217 |
Q |
| |
|
|||||||| ||||| ||||||| ||| | |||||||| | |||||||| |||||||||| |||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
27996821 |
tttgtattgggattccctacttttaaatgtaatatagtgttgggatgaatgacgttcaacacctggaagaggagcagggagtccaattgaaagttccttt |
27996722 |
T |
|
| Q |
218 |
ccagtttcaatcaatcttttaatttgctccttctt |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
27996721 |
ccagtttcaatcaatcttttaatttgctccttctt |
27996687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 26 - 252
Target Start/End: Original strand, 28515146 - 28515372
Alignment:
| Q |
26 |
acttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatt |
125 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28515146 |
acttctttggccaatgtagtttttcctgttccccccatcccttgcaacccgattatataattgttgtcatctttcagagcatctaaaagctctttgtatt |
28515245 |
T |
|
| Q |
126 |
tggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttc |
225 |
Q |
| |
|
| |||| || |||| ||||| |||||||| | |||||||||||||||||||||||||||| | ||||||||| ||||| ||| | |||||||||||| |
|
|
| T |
28515246 |
tagattccctgcttttaaaaggaatatagtgttgggatgaataacgttcaacatctggaagacgggcagggagttcaattgaaagttgctttccagtttc |
28515345 |
T |
|
| Q |
226 |
aatcaatcttttaatttgctccttctt |
252 |
Q |
| |
|
||| ||| |||| |||| ||||||||| |
|
|
| T |
28515346 |
aattaatattttcattttctccttctt |
28515372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 26 - 252
Target Start/End: Original strand, 17751150 - 17751376
Alignment:
| Q |
26 |
acttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatt |
125 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||| | ||| ||||||||||||||| |
|
|
| T |
17751150 |
acttcttttgccaatgtagtttttcctgtgccccccatccctttcaacccgattacataattgttgtcatctttcaatgaatccaaaagctctttgtatc |
17751249 |
T |
|
| Q |
126 |
tggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttc |
225 |
Q |
| |
|
| |||| ||| |||| ||| | |||||||| | ||||||||||||||| |||||||||||| ||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
17751250 |
ttgattctctgcttttaaagggaatatagtgttgggatgaataacgttctacatctggaagacgagcagggagtccaattgaaagttcctttccagtttc |
17751349 |
T |
|
| Q |
226 |
aatcaatcttttaatttgctccttctt |
252 |
Q |
| |
|
|||||||||| | |||||||| ||||| |
|
|
| T |
17751350 |
aatcaatcttctgatttgctcgttctt |
17751376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 26 - 252
Target Start/End: Original strand, 19052470 - 19052696
Alignment:
| Q |
26 |
acttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatt |
125 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||| | ||| ||||||||||||||| |
|
|
| T |
19052470 |
acttcttttgccaatgtagtttttcctgtgccccccatccctttcaacccgattacataattgttgtcatctttcaatgaatccaaaagctctttgtatc |
19052569 |
T |
|
| Q |
126 |
tggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttc |
225 |
Q |
| |
|
| |||| ||| |||| ||| | |||||||| | ||||||||||||||| |||||||||||| ||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
19052570 |
ttgattctctgcttttaaagggaatatagtgttgggatgaataacgttctacatctggaagacgagcagggagtccaattgaaagttcctttccagtttc |
19052669 |
T |
|
| Q |
226 |
aatcaatcttttaatttgctccttctt |
252 |
Q |
| |
|
|||||||||| | |||||||| ||||| |
|
|
| T |
19052670 |
aatcaatcttctgatttgctcgttctt |
19052696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 27961180 - 27960960
Alignment:
| Q |
23 |
cccacttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgt |
122 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||| |||| ||||| ||||||||||||| |
|
|
| T |
27961180 |
cccacttccttgaccattgtagtttttcctgtgccccccatcccttgcaacccagtcatatagttgttgtcatcattcaatgcatccaaaagctctttgt |
27961081 |
T |
|
| Q |
123 |
atttggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagt |
222 |
Q |
| |
|
||||| ||| || |||| ||||| |||||||| | ||||||||||||||||| |||||||||| | ||||| |||||||| | ||| ||||||||||| |
|
|
| T |
27961080 |
atttgaattccctgcttttaaaaggaatatagtgttgggatgaataacgttcaatatctggaagatgggcaggaagtccaatcaaaagttcctttccagt |
27960981 |
T |
|
| Q |
223 |
ttcaatcaatcttttaatttg |
243 |
Q |
| |
|
|||||||||| |||| ||||| |
|
|
| T |
27960980 |
ttcaatcaatatttttatttg |
27960960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 23 - 252
Target Start/End: Original strand, 27436550 - 27436779
Alignment:
| Q |
23 |
cccacttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgt |
122 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| | ||||| ||||||||||||| |
|
|
| T |
27436550 |
cccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataactgtcttcatcttttaatgcatccaaaagctctttgt |
27436649 |
T |
|
| Q |
123 |
atttggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagt |
222 |
Q |
| |
|
||||||||| || |||| |||| |||||||| || |||||||| | |||| ||||||||| || ||||| || || ||||| ||| ||||||||||| |
|
|
| T |
27436650 |
atttggattccctgcttttaaaatgaatatagtgtcgggatgaatgaagttctacatctggacgacgagcaaggggtgcaattgaaagttcctttccagt |
27436749 |
T |
|
| Q |
223 |
ttcaatcaatcttttaatttgctccttctt |
252 |
Q |
| |
|
||||||||||||||||||| |||||||||| |
|
|
| T |
27436750 |
ttcaatcaatcttttaattcgctccttctt |
27436779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 26 - 252
Target Start/End: Complemental strand, 27950480 - 27950254
Alignment:
| Q |
26 |
acttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatt |
125 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||| |||||| ||||||| ||||| | |
|
|
| T |
27950480 |
acttctttggccaacatagtttttcctgtgccccccatccctttcaacccgattacataattgttgtcatctttcaaagcatccaaaagctggttgtagt |
27950381 |
T |
|
| Q |
126 |
tggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttc |
225 |
Q |
| |
|
||||||| || ||||||||| ||||||| || || ||||| ||||||||||||||||| ||||||||| ||||||| ||| |||||||||| || |
|
|
| T |
27950380 |
tggatttcctgctttcaaaatgaatatagacttgcgacgaatattgttcaacatctggaagaagagcagggactccaattgaaagttcctttccagattg |
27950281 |
T |
|
| Q |
226 |
aatcaatcttttaatttgctccttctt |
252 |
Q |
| |
|
|||||||||||||||| ||||||||| |
|
|
| T |
27950280 |
aatcaatcttttaattgtctccttctt |
27950254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 26 - 252
Target Start/End: Complemental strand, 27908097 - 27907871
Alignment:
| Q |
26 |
acttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatt |
125 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||| ||||| |||||| | |||||| |
|
|
| T |
27908097 |
acttctttggccaacgtagtttttcctgtgccccccatcccttgcaagccagttatataattgttgtcatctttcaatgcatccaaaagcattctgtatt |
27907998 |
T |
|
| Q |
126 |
tggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttc |
225 |
Q |
| |
|
| ||| || |||| |||| || ||||| | ||||||||||||||||||||||||| | | ||||||||| ||||| ||| | |||||||||||| |
|
|
| T |
27907997 |
ttaattccctgcttttaaaatgaaaatagtgttgggatgaataacgttcaacatctggataacgggcagggagttcaattgaaagttgctttccagtttc |
27907898 |
T |
|
| Q |
226 |
aatcaatcttttaatttgctccttctt |
252 |
Q |
| |
|
||| |||||||| |||||||||||||| |
|
|
| T |
27907897 |
aattaatcttttcatttgctccttctt |
27907871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 40 - 252
Target Start/End: Complemental strand, 11407082 - 11406870
Alignment:
| Q |
40 |
tgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttggattttctactt |
139 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||| || ||||||||||||||| |||| | ||||| || ||||||| ||| ||| || |
|
|
| T |
11407082 |
tgtagtttttcctgtgccccccatcccatgcaacccgattataaaattgttgtcatctttcaaagcaactaaaagatcattgtattaagataaactaatt |
11406983 |
T |
|
| Q |
140 |
tcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatcaatcttttaa |
239 |
Q |
| |
|
| ||||| |||||| | || || |||||| | |||||||||||||||| |||||| || ||||||| ||| | || ||||||||||||||||||||||| |
|
|
| T |
11406982 |
taaaaaggaatatactgtccgggtgaatagcattcaacatctggaagacgagcagtgaatccaattgaaagtttctctccagtttcaatcaatcttttaa |
11406883 |
T |
|
| Q |
240 |
tttgctccttctt |
252 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11406882 |
tttgctccttctt |
11406870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 26622795 - 26622614
Alignment:
| Q |
23 |
cccacttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgt |
122 |
Q |
| |
|
||||||||| |||||| ||||||||| | |||||||||||||||||||| ||||||||||| ||||| ||||||| || ||||| || | ||||||| |
|
|
| T |
26622795 |
cccacttctatggccaatgtagttttcctagtgccccccatcccttgcaatccggttatatagttgttgccatcttttagtgcatccaacaattctttgt |
26622696 |
T |
|
| Q |
123 |
atttggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaat |
204 |
Q |
| |
|
|||| || | ||| |||| ||||||||| || | ||||||||||||||||||||||||||||| || ||||||| |||| |
|
|
| T |
26622695 |
attttgactctctgcttttaaaagaaatgtaagttttggatgaataacgttcaacatctggaagacgatgagggagttcaat |
26622614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 18725147 - 18725274
Alignment:
| Q |
23 |
cccacttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgt |
122 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||| |||||||| | ||||||||| || |||||||| | || ||||| |||||||||| || |
|
|
| T |
18725147 |
cccacttcttttgccaatgtagtttttcctgtgccccccattccttgcaatctagttatataattgctgtcatctcttagtgcatccaaaagctcttcgt |
18725246 |
T |
|
| Q |
123 |
atttggattttctactttcaaaagaaat |
150 |
Q |
| |
|
|||| | ||||| |||||||||||||| |
|
|
| T |
18725247 |
atttcaactttctgctttcaaaagaaat |
18725274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 125
Target Start/End: Original strand, 27403170 - 27403272
Alignment:
| Q |
23 |
cccacttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgt |
122 |
Q |
| |
|
||||||| | |||||| ||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||| ||||| || || ||||||| |
|
|
| T |
27403170 |
cccacttttatggccaaagtagtttttccggtgccacccatcccttgcaatccggttatatagttgttgtcatctttcagtgcatccaacagttctttgt |
27403269 |
T |
|
| Q |
123 |
att |
125 |
Q |
| |
|
||| |
|
|
| T |
27403270 |
att |
27403272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 18033527 - 18033612
Alignment:
| Q |
23 |
cccacttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatc |
108 |
Q |
| |
|
||||||| | |||||| ||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||| ||||| |
|
|
| T |
18033527 |
cccacttttatggccaaagtagtttttccggtgccacccatcccttgcaatccggttatatagttgttgtcatctttcagtgcatc |
18033612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 27342305 - 27342141
Alignment:
| Q |
23 |
cccacttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgt |
122 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||| ||| |||| | || |||||| || |||||||| | || ||||| ||||| |||| || |
|
|
| T |
27342305 |
cccacttcttttgccaatgtagtttttcctgtgccccccattcctcgcaatgcagtaatataattgctgtcatctcttagtgcatccaaaagatcttcgt |
27342206 |
T |
|
| Q |
123 |
atttggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaaga |
187 |
Q |
| |
|
|||| | ||||| |||||||||| ||| || | | || |||||||| |||||| |||||||| |
|
|
| T |
27342205 |
atttcaagtttctgctttcaaaaggaatgtaatattgagaagaataacgctcaacacctggaaga |
27342141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 27368595 - 27368533
Alignment:
| Q |
23 |
cccacttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataa |
85 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||| || ||||| |||||||||||| |
|
|
| T |
27368595 |
cccacttcttttgccaatgtagtttttcctgtgccccccattccgtgcaatccggttatataa |
27368533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 27771672 - 27771593
Alignment:
| Q |
23 |
cccacttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcag |
102 |
Q |
| |
|
|||||||||||||| | ||||||||| || |||| ||||| ||||||||||||||||| || |||| ||||||||||| |
|
|
| T |
27771672 |
cccacttctttggctaatgtagttttaccgatgcctcccataccttgcaacccggttatgtagttgttttcatctttcag |
27771593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 28 - 252
Target Start/End: Original strand, 9332074 - 9332298
Alignment:
| Q |
28 |
ttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttg |
127 |
Q |
| |
|
|||||||| || ||||| ||||||||||||| ||||||||| ||||||| ||| | || ||||||| ||||||| ||||| |||||||||||||||||| |
|
|
| T |
9332074 |
ttctttggtcaatgtaggttttcctgtgcccgccatccctttcaacccgattacaaaattgttgtcgtctttcaatgcatccaaaagctctttgtatttg |
9332173 |
T |
|
| Q |
128 |
gattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaa |
227 |
Q |
| |
|
|||| ||||||| ||||| |||||| | | |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| | ||||||| |
|
|
| T |
9332174 |
gattccctacttttaaaaggaatataatgttgggatgaataacgttcaacatctggaagacgagcagggagtccaattgaaagttcctttaccgtttcaa |
9332273 |
T |
|
| Q |
228 |
tcaatcttttaatttgctccttctt |
252 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
9332274 |
tcaatcttttaatttgctccttctt |
9332298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 28 - 252
Target Start/End: Original strand, 9385857 - 9386081
Alignment:
| Q |
28 |
ttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttg |
127 |
Q |
| |
|
|||||||| || ||||| ||||||||||||| ||||||||| ||||||| ||| | || ||||||| ||||||| ||||| |||||||||||||||||| |
|
|
| T |
9385857 |
ttctttggtcaatgtaggttttcctgtgcccgccatccctttcaacccgattacaaaattgttgtcgtctttcaatgcatccaaaagctctttgtatttg |
9385956 |
T |
|
| Q |
128 |
gattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaa |
227 |
Q |
| |
|
|||| ||||||| ||||| |||||| | | |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| | ||||||| |
|
|
| T |
9385957 |
gattccctacttttaaaaggaatataatgttgggatgaataacgttcaacatctggaagacgagcagggagtccaattgaaagttcctttaccgtttcaa |
9386056 |
T |
|
| Q |
228 |
tcaatcttttaatttgctccttctt |
252 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
9386057 |
tcaatcttttaatttgctccttctt |
9386081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 25 - 252
Target Start/End: Complemental strand, 22268 - 22041
Alignment:
| Q |
25 |
cacttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtat |
124 |
Q |
| |
|
|||||| ||| ||| |||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
22268 |
cacttccttgaccaatgtagtttttcctgtgccccccatcccttgcatcccggttataaaattgttgtcatctttcaaagcatctaaaagctctttgtat |
22169 |
T |
|
| Q |
125 |
ttggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagttt |
224 |
Q |
| |
|
|| ||| ||| ||||||||| |||||| | || || |||||| | |||||||||||||||| |||||| || ||||||| ||| | || |||||||| |
|
|
| T |
22168 |
ttcgatggactaatttcaaaaggaatatactgtccgggtgaatagcattcaacatctggaagacgagcagtgaatccaattgaaagtttctctccagttt |
22069 |
T |
|
| Q |
225 |
caatcaatcttttaatttgctccttctt |
252 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
22068 |
caatcaatcttttaatttgctccttctt |
22041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 26 - 252
Target Start/End: Original strand, 8696495 - 8696719
Alignment:
| Q |
26 |
acttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatt |
125 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
8696495 |
acttctttggccaatgtagtttttcctgtgccccccatccctttcaacccgattacataattgttgtcatctttcaatgcatccaaaagctctttgtatt |
8696594 |
T |
|
| Q |
126 |
tggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttc |
225 |
Q |
| |
|
|||||| ||| ||||| |||||||| | ||||||||||||||||||| |||||||| |||||||||||||||| ||| |||||||||| || |
|
|
| T |
8696595 |
tggattcctggcttctaaaaggaatatagtgttgggatgaataacgttcaacacctggaagacaagcagggagtccaattgaaagttcctttccag--tc |
8696692 |
T |
|
| Q |
226 |
aatcaatcttttaatttgctccttctt |
252 |
Q |
| |
|
||| |||||||||||||||| |||||| |
|
|
| T |
8696693 |
aattaatcttttaatttgcttcttctt |
8696719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 23 - 252
Target Start/End: Original strand, 26028436 - 26028665
Alignment:
| Q |
23 |
cccacttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgt |
122 |
Q |
| |
|
||||| || ||| ||||||||||||||| |||||||||||||||||| |||||| |||||||| ||||||| |||||||| ||| |||||||| ||| |
|
|
| T |
26028436 |
cccacctccttgaccattgtagtttttcttgtgccccccatcccttgtaacccgattatataattgttgtcgtctttcagtacattcaaaagctcaatgt |
26028535 |
T |
|
| Q |
123 |
atttggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagt |
222 |
Q |
| |
|
|||| |||| ||| |||| |||||||||||||| | |||||||| |||||||||||| ||||| |||||||||||||||| |||| ||||||||||| |
|
|
| T |
26028536 |
atttagattctctgcttttaaaagaaatatagtgttgagatgaatatcgttcaacatctagaagataagcagggagtccaattgcaagttcctttccagt |
26028635 |
T |
|
| Q |
223 |
ttcaatcaatcttttaatttgctccttctt |
252 |
Q |
| |
|
||| | |||| ||||||| || |||||||| |
|
|
| T |
26028636 |
ttccaacaattttttaatatgttccttctt |
26028665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0912 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0912
Description:
Target: scaffold0912; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 875 - 1039
Alignment:
| Q |
23 |
cccacttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgt |
122 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||| |||||||| || | || |||| ||||||||||| | || ||||| ||||||||||||| |
|
|
| T |
875 |
cccacttcttttgccaatgtagtttttcctgtgccccccattccttgcaatccagataaataattgttgtcatctcttagtgcatctaaaagctctttgt |
974 |
T |
|
| Q |
123 |
atttggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaaga |
187 |
Q |
| |
|
|||| | ||||| |||||||||||||| || ||| || |||||||| |||||| |||||||| |
|
|
| T |
975 |
atttcaactttctgctttcaaaagaaatgtaatcttgagaagaataacgctcaacacctggaaga |
1039 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 74956 - 75120
Alignment:
| Q |
23 |
cccacttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgt |
122 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||| |||||||| || || |||||| ||||||||||| | || ||||| |||||||||| || |
|
|
| T |
74956 |
cccacttcttttgccaatgtagtttttcctgtgccccccattccttgcaatccagtaatataattgttgtcatctcttagtgcatccaaaagctcttcgt |
75055 |
T |
|
| Q |
123 |
atttggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaaga |
187 |
Q |
| |
|
|||| | |||||||||||||||||||| || | | || |||||||| |||||| |||||||| |
|
|
| T |
75056 |
atttcaactttctactttcaaaagaaatgtaatattgagaagaataacgctcaacacctggaaga |
75120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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