View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15529_low_1 (Length: 736)

Name: NF15529_low_1
Description: NF15529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15529_low_1
NF15529_low_1
[»] chr7 (1 HSPs)
chr7 (55-720)||(31630709-31631374)


Alignment Details
Target: chr7 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 55 - 720
Target Start/End: Original strand, 31630709 - 31631374
Alignment:
Q  55 cattagtactacatgaaataaaactcatcatcaaataccaaacacaacaatctaccaaaagaaaagctaaaatacctgaaggacacaacccattaccaca 154  Q
    ||||||| ||||||||||||| | |||||| |||| ||||||||||| | |  |||||||||||||||||||||||||||||||||||||||||||||||    
T  31630709 cattagttctacatgaaataagaatcatcaacaaacaccaaacacaatagttaaccaaaagaaaagctaaaatacctgaaggacacaacccattaccaca 31630808  T
Q  155 aatacaaataggttcattatcatcagaatcaaacccacattgttggccaccagaactaatacactcaagacaatcattctcaaaagggttgttataattc 254  Q
    |||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31630809 aatacaaatatgttcgttttcatcagaatcaaacccacattgttggccaccagaactaatacactcaagacaatcattctcaaaagggttgttataattc 31630908  T
Q  255 acattaaacccttccatcaaaatctccctaagcaaagaacgattaccagcaaacctattagcttgcttttcaagaatcggcaccccaacaccataatcac 354  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  31630909 acattaaacccttccatcaaaacctccctaagcaaagaacgattaccagcaaacctattagcttgctcttcaagaattggcaccccaacaccataatcac 31631008  T
Q  355 attgaacaaacttaagaactgggtctaaaggaaatggaccaatcaaagtatatgaattgttcttatatccattactatcacagtaaaacaaattatgtgg 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31631009 attgaacaaacttaagaactgggtctaaaggaaatggaccaatcaaagtatatgaattgttcttatatccattactatcacagtaaaacaaattatgtgg 31631108  T
Q  455 cttttcagtgaataatgaagtgggttggcacccataaaacaaagtaattttactgtttcccaaaccgttgctaaagctagttccaccaaaagttgagtta 554  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31631109 cttttcggtgaataatgaagtgggttggcacccataaaacaaagtaattttactgtttcccaaaccgttgctaaagctagttccaccaaaagttgagtta 31631208  T
Q  555 acataatgatgggtgcatgtttcattccaaaggtctaatcttgctaaggtgagagaatgagttactgagttgacttgaagaactcggtaactaactgagg 654  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31631209 acataatgatgggtgcatgtttcattccaaaggtctaatcttgctaaggtgagagaatgagttaccgagttgacttgaagaactcggtaactaactgagg 31631308  T
Q  655 aaatgttcaactctggaacattgtttttgcagttcaggtgaaactgcggtggcccacagtaggaag 720  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31631309 aaatgttcaactctggaacattgtttttgcagttcaggtgaaactgtggtggcccacagtaggaag 31631374  T

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