View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15529_low_4 (Length: 324)
Name: NF15529_low_4
Description: NF15529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15529_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 28988043 - 28988356
Alignment:
| Q |
1 |
ttgttactagtaagttctgaagcacggacacctcttagattaggtgtttcctgtatccaaaacgcaccggtgtctgacactgacacaacacctacacata |
100 |
Q |
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| T |
28988043 |
ttgttactagtaagttctgaagcacggacacctcttagattaggtgtttcctgtgtccaaaacgcaccggtgtctgacactgacacaacacctacacata |
28988142 |
T |
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| Q |
101 |
aatcacctgtgtcgacgtatccgtgtcagtgtcgtgtcggtgtctgcttcgtagctagtaaagtctaagttagaattttggagctttaaataattgtagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28988143 |
aatcacctgtgtcgacgtatccgtgtcagtgtcgtgtcggtgtctgcttcgtagctagtaaagtataagttagaattttggagctttaaataattgtagt |
28988242 |
T |
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| Q |
201 |
gtggt-ggggaaaaataccttttcttctttctttactctgaggttgtgtacattgattatgttaatgatgcttccgggttctgattttgagccctgttac |
299 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28988243 |
gtggtgggggaaaaataccttttcttctttcttttctctgaggttgtgtac---gattatgttaatgatgcttctgggttctgattttgagccctgttat |
28988339 |
T |
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| Q |
300 |
tttgtggctgatgatgt |
316 |
Q |
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||||||||||||||||| |
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| T |
28988340 |
tttgtggctgatgatgt |
28988356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 138
Target Start/End: Original strand, 44572654 - 44572683
Alignment:
| Q |
109 |
gtgtcgacgtatccgtgtcagtgtcgtgtc |
138 |
Q |
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| T |
44572654 |
gtgtcgacgtatccgtgtcagtgtcgtgtc |
44572683 |
T |
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