View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15529_low_5 (Length: 303)

Name: NF15529_low_5
Description: NF15529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15529_low_5
NF15529_low_5
[»] chr8 (9 HSPs)
chr8 (14-303)||(14692443-14692744)
chr8 (161-303)||(22651959-22652101)
chr8 (161-303)||(29510238-29510380)
chr8 (232-303)||(25192351-25192423)
chr8 (161-278)||(29447044-29447161)
chr8 (162-210)||(40064027-40064075)
chr8 (95-137)||(12123214-12123256)
chr8 (217-286)||(5307061-5307130)
chr8 (225-285)||(33382016-33382077)
[»] chr6 (6 HSPs)
chr6 (165-300)||(18252688-18252824)
chr6 (212-285)||(7569152-7569226)
chr6 (161-303)||(9107304-9107446)
chr6 (234-300)||(34446551-34446618)
chr6 (161-205)||(8776913-8776957)
chr6 (161-205)||(34595204-34595248)
[»] chr5 (7 HSPs)
chr5 (161-303)||(39698524-39698666)
chr5 (161-278)||(30098334-30098451)
chr5 (250-303)||(41558705-41558759)
chr5 (218-303)||(22423802-22423888)
chr5 (251-280)||(14818326-14818355)
chr5 (251-303)||(19737505-19737558)
chr5 (251-303)||(32428949-32429002)
[»] scaffold0007 (1 HSPs)
scaffold0007 (234-303)||(225274-225344)
[»] chr1 (5 HSPs)
chr1 (235-286)||(40747780-40747832)
chr1 (185-285)||(24176324-24176425)
chr1 (232-300)||(36878447-36878516)
chr1 (232-303)||(1486713-1486785)
chr1 (161-205)||(6414936-6414980)
[»] chr7 (5 HSPs)
chr7 (232-286)||(2525848-2525903)
chr7 (161-295)||(11665374-11665508)
chr7 (225-287)||(38134403-38134466)
chr7 (234-303)||(43249976-43250046)
chr7 (234-285)||(18233604-18233656)
[»] chr4 (8 HSPs)
chr4 (161-303)||(7012049-7012192)
chr4 (234-299)||(19230315-19230381)
chr4 (161-278)||(24613635-24613752)
chr4 (232-286)||(56049877-56049931)
chr4 (228-277)||(47513323-47513372)
chr4 (161-205)||(2361920-2361964)
chr4 (252-299)||(20743302-20743350)
chr4 (161-205)||(28000675-28000719)
[»] chr3 (3 HSPs)
chr3 (161-303)||(37077341-37077484)
chr3 (234-303)||(24205047-24205117)
chr3 (219-300)||(14829676-14829757)
[»] scaffold0168 (1 HSPs)
scaffold0168 (218-303)||(21026-21112)
[»] chr2 (3 HSPs)
chr2 (232-303)||(23718009-23718081)
chr2 (232-303)||(24105681-24105753)
chr2 (232-303)||(37558960-37559032)


Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 303
Target Start/End: Complemental strand, 14692744 - 14692443
Alignment:
Q  14 ttttattctttcgattatatcgaagatactattggtttttgaataaaccattaattta------------tcaccctttattcaatttagtattaaatat 101  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||            ||||||||||||||||||||||||||||||    
T  14692744 ttttattctttcgattatatcgaagatactattggtttttgactaaaccatcaatttagtttctaaactatcaccctttattcaatttagtattaaatat 14692645  T
Q  102 gataggtaatgctatataaaatctgtcaatttagtctctgttttaagttgttagctttaaagcacggacactcctctgattatatgtgtctcggtgtcag 201  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||    
T  14692644 gataggtaatgctatataaaatctgtcaatttagtctcttttttaagttgttagctttaaagcacggacactcccctgattatgtgtgtctcagtgtcag 14692545  T
Q  202 acacacgtccgtttccgacacagacatgataccgacacctataattattttgaattatgtcatttctcaaattattatctgtgtcagagtgtcagtgtcc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14692544 acacacgtccgtttccgacacagacatgataccgacacctatagttacactgaattatgtcatttctcaaattattatctgtgtcagagtgtcagtgtcc 14692445  T
Q  302 gt 303  Q
    ||    
T  14692444 gt 14692443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 303
Target Start/End: Complemental strand, 22652101 - 22651959
Alignment:
Q  161 aagcacggacactcctctgattatatgtgtctcggtgtcagacacacgtccgtttccgacacagacatgataccgacacctataattattttgaattatg 260  Q
    ||||||||||||||||| ||||| | ||||| ||||||| |||||| || ||| |||||||| |||| || |||||||| | ||||||| ||||||||||    
T  22652101 aagcacggacactcctcggattagacgtgtcccggtgtcggacacatgt-cgtgtccgacaccgacacgacaccgacacttgtaattatattgaattatg 22652003  T
Q  261 tca-tttctcaaattattatctgtgtcagagtgtcagtgtccgt 303  Q
    | | ||| ||||||||||| ||||||| | ||||||||||||||    
T  22652002 tgattttttcaaattattagctgtgtcggcgtgtcagtgtccgt 22651959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 303
Target Start/End: Original strand, 29510238 - 29510380
Alignment:
Q  161 aagcacggacactcctctgattatatgtgtctcggtgtcagacacacgtccgtttccgacacagacatgataccgacacctataattattttgaattatg 260  Q
    ||||||||||||||||| |||||  |||||| ||||||| ||||| ||| ||| |||||||| ||||  | |||||||| | |||||||  |||||| ||    
T  29510238 aagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgt-cgtgtccgacaccgacactacaccgacacttgtaattatactgaattttg 29510336  T
Q  261 tca-tttctcaaattattatctgtgtcagagtgtcagtgtccgt 303  Q
    | | ||| ||||||||||| ||||||| | ||||||||||||||    
T  29510337 tgattttttcaaattattagctgtgtcggcgtgtcagtgtccgt 29510380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 25192351 - 25192423
Alignment:
Q  232 accgacacctataattattttgaattatgtca-tttctcaaattattatctgtgtcagagtgtcagtgtccgt 303  Q
    |||||||| |||||||||  |||||||||||| ||| ||||||||||| ||||||| | ||||||||||||||    
T  25192351 accgacacttataattatactgaattatgtcactttttcaaattattagctgtgtcggcgtgtcagtgtccgt 25192423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 278
Target Start/End: Original strand, 29447044 - 29447161
Alignment:
Q  161 aagcacggacactcctctgattatatgtgtctcggtgtcagacacacgtccgtttccgacacagacatgataccgacacctataattattttgaattatg 260  Q
    ||||||||||||||||  |||||   |||||  ||||||||||||| ||| || |||||||| ||||||| |||||||| | || |||  ||||||||||    
T  29447044 aagcacggacactcctaggattaggcgtgtcctggtgtcagacacatgtc-gtgtccgacaccgacatgacaccgacacttgtagttacattgaattatg 29447142  T
Q  261 tca-tttctcaaattatta 278  Q
    | | |||||||||||||||    
T  29447143 tgattttctcaaattatta 29447161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 40064075 - 40064027
Alignment:
Q  162 agcacggacactcctctgattatatgtgtctcggtgtcagacacacgtc 210  Q
    |||||||||||||||| ||||| ||||||| ||||||| ||||||||||    
T  40064075 agcacggacactcctcggattagatgtgtcccggtgtcggacacacgtc 40064027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 12123256 - 12123214
Alignment:
Q  95 taaatatgataggtaatgctatataaaatctgtcaatttagtc 137  Q
    ||||||||||| ||| | |||||||||||||||||||||||||    
T  12123256 taaatatgataagtagtcctatataaaatctgtcaatttagtc 12123214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 5307130 - 5307061
Alignment:
Q  217 cgacacagacatgataccgacacctataattattttgaattatgtcatttctcaaattattatctgtgtc 286  Q
    |||||| |||| || |||||||| ||| |||   |||||||||||||||| ||||||||||||| |||||    
T  5307130 cgacacggacacgacaccgacacttatgatttcattgaattatgtcatttttcaaattattatcagtgtc 5307061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 33382016 - 33382077
Alignment:
Q  225 acatgataccgacacctataattattttgaattatgtca-tttctcaaattattatctgtgt 285  Q
    |||||| |||||||| |||||||| | |||||||||||| ||||| ||||||||||| ||||    
T  33382016 acatgacaccgacacatataattactctgaattatgtcattttcttaaattattatcggtgt 33382077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 165 - 300
Target Start/End: Original strand, 18252688 - 18252824
Alignment:
Q  165 acggacactcctctgattatatgtgtctcggtgtcagacacacgtccgtttccgacacagacatgataccgacacctataattattttgaattatgtca- 263  Q
    |||||||||| |  |||||| ||||| | ||||||||||||||||| |||||| ||||||||| ||||||||||||| ||||||   | ||||||||||     
T  18252688 acggacactctttggattatgtgtgttttggtgtcagacacacgtcggtttccaacacagacacgataccgacacctgtaattacactaaattatgtcat 18252787  T
Q  264 tttctcaaattattatctgtgtcagagtgtcagtgtc 300  Q
    ||| | ||||||||||| || || ||||||| |||||    
T  18252788 ttttttaaattattatcggtatcggagtgtctgtgtc 18252824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 7569152 - 7569226
Alignment:
Q  212 gtttccgacacagacatgataccgacacctataattattttgaattatgtca-tttctcaaattattatctgtgt 285  Q
    ||||| ||||||||||||||||| |||||||||||||   |||||||||| | ||||||||||||||||||||||    
T  7569152 gtttcggacacagacatgataccaacacctataattacactgaattatgtaattttctcaaattattatctgtgt 7569226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 303
Target Start/End: Original strand, 9107304 - 9107446
Alignment:
Q  161 aagcacggacactcctctgattatatgtgtctcggtgtcagacacacgtccgtttccgacacagacatgataccgacacctataattattttgaattatg 260  Q
    |||||||| |||||||| |||||  |||||| ||||||| |||||||||  || |||||||| |||| || |||||||| | ||||||   |||||| ||    
T  9107304 aagcacgggcactcctcggattaggtgtgtcccggtgtcggacacacgtt-gtgtccgacaccgacacgacaccgacacttgtaattacactgaattttg 9107402  T
Q  261 tcatttct-caaattattatctgtgtcagagtgtcagtgtccgt 303  Q
    | |||| | |||||||||| ||||||| | |||| |||||||||    
T  9107403 tgattttttcaaattattagctgtgtcggcgtgttagtgtccgt 9107446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 300
Target Start/End: Complemental strand, 34446618 - 34446551
Alignment:
Q  234 cgacacctataattattttgaattatgtcattt-ctcaaattattatctgtgtcagagtgtcagtgtc 300  Q
    |||||||||| ||||   ||||||||||||||| |||||||||||||| ||||||||||||| |||||    
T  34446618 cgacacctatgattacactgaattatgtcattttctcaaattattatccgtgtcagagtgtctgtgtc 34446551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 8776913 - 8776957
Alignment:
Q  161 aagcacggacactcctctgattatatgtgtctcggtgtcagacac 205  Q
    ||||||||||||||||| |||||  |||||||||||||| |||||    
T  8776913 aagcacggacactcctcggattaggtgtgtctcggtgtcggacac 8776957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 34595248 - 34595204
Alignment:
Q  161 aagcacggacactcctctgattatatgtgtctcggtgtcagacac 205  Q
    ||||||||||||||||| |||||  |||||| |||||||||||||    
T  34595248 aagcacggacactcctcggattaggtgtgtcccggtgtcagacac 34595204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 303
Target Start/End: Complemental strand, 39698666 - 39698524
Alignment:
Q  161 aagcacggacactcctctgattatatgtgtctcggtgtcagacacacgtccgtttccgacacagacatgataccgacacctataattattttgaattatg 260  Q
    ||||||||||||||||| |||||   ||||||||||||| || ||| ||| || |||||||| |||| || || ||||| | ||||||   |||||||||    
T  39698666 aagcacggacactcctcggattaggcgtgtctcggtgtcggatacatgtc-gtgtccgacaccgacacgacactgacacttgtaattacactgaattatg 39698568  T
Q  261 tcatttct-caaattattatctgtgtcagagtgtcagtgtccgt 303  Q
    | |||| | |||||||||| ||||||||| ||||||||||||||    
T  39698567 tgattttttcaaattattagctgtgtcagcgtgtcagtgtccgt 39698524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 278
Target Start/End: Complemental strand, 30098451 - 30098334
Alignment:
Q  161 aagcacggacactcctctgattatatgtgtctcggtgtcagacacacgtccgtttccgacacagacatgataccgacacctataattattttgaattatg 260  Q
    ||||||||||| ||||| |||||  ||||||  |||||| |||||  ||| || |||||||| |||  |||||||||| |||||||||  ||||||||||    
T  30098451 aagcacggacattcctcggattaggtgtgtcctggtgtctgacacgtgtc-gtgtccgacactgactcgataccgacatctataattacattgaattatg 30098353  T
Q  261 tca-tttctcaaattatta 278  Q
    | | |||||||||||||||    
T  30098352 tgattttctcaaattatta 30098334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 41558705 - 41558759
Alignment:
Q  250 tttgaattatgtcattt-ctcaaattattatctgtgtcagagtgtcagtgtccgt 303  Q
    ||||||||||||||||| ||||||||||||| |||||||  ||||||||||||||    
T  41558705 tttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgt 41558759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 303
Target Start/End: Original strand, 22423802 - 22423888
Alignment:
Q  218 gacacagacatgataccgacacctataattattttgaattatgtca-tttctcaaattattatctgtgtcagagtgtcagtgtccgt 303  Q
    ||||| |||| || |||||||  ||||||||| ||||||||||| | |||||||||||||||   ||||||| |||||||| |||||    
T  22423802 gacaccgacacgacaccgacatatataattatattgaattatgtgattttctcaaattattagtagtgtcagggtgtcagtatccgt 22423888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 280
Target Start/End: Original strand, 14818326 - 14818355
Alignment:
Q  251 ttgaattatgtcatttctcaaattattatc 280  Q
    ||||||||||||||||||||||||||||||    
T  14818326 ttgaattatgtcatttctcaaattattatc 14818355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 19737505 - 19737558
Alignment:
Q  251 ttgaattatgtcattt-ctcaaattattatctgtgtcagagtgtcagtgtccgt 303  Q
    ||||||||||| |||| |||||||||||||| || |||| ||||||||||||||    
T  19737505 ttgaattatgtaattttctcaaattattatcggtttcagcgtgtcagtgtccgt 19737558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 32428949 - 32429002
Alignment:
Q  251 ttgaattatgtca-tttctcaaattattatctgtgtcagagtgtcagtgtccgt 303  Q
    ||||||||||||| ||||||||||||||||| ||||||   |||||||||||||    
T  32428949 ttgaattatgtcactttctcaaattattatcagtgtcaccatgtcagtgtccgt 32429002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 225274 - 225344
Alignment:
Q  234 cgacacctataattattttgaattatgtcattt-ctcaaattattatctgtgtcagagtgtcagtgtccgt 303  Q
    |||||| ||||||||  ||| |||||||||||| |||||||||||||||||||| | ||||||||||||||    
T  225274 cgacacttataattacattgtattatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtccgt 225344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 40747780 - 40747832
Alignment:
Q  235 gacacctataattattttgaattatgtca-tttctcaaattattatctgtgtc 286  Q
    ||||||||||||||  ||||||||||||| ||||||||||||||||| |||||    
T  40747780 gacacctataattacattgaattatgtcattttctcaaattattatccgtgtc 40747832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 285
Target Start/End: Original strand, 24176324 - 24176425
Alignment:
Q  185 atgtgtctcggtgtcagacacacgtccgtttccgacacagacatgataccgacacctataattattttgaattatgtca-tttctcaaattattatctgt 283  Q
    ||||||| ||||||  ||||  |||| || |||||||| ||||||||  |||||||||||||||   ||||| |||| | ||||||||||||||||| ||    
T  24176324 atgtgtcccggtgttggacattcgtcggtgtccgacaccgacatgatctcgacacctataattacactgaatgatgttattttctcaaattattatcggt 24176423  T
Q  284 gt 285  Q
    ||    
T  24176424 gt 24176425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 36878516 - 36878447
Alignment:
Q  232 accgacacctataattattttgaattatgtcattt-ctcaaattattatctgtgtcagagtgtcagtgtc 300  Q
    |||||||||||||||||   |||||||||| |||| |||||||||||| | ||||| | |||||||||||    
T  36878516 accgacacctataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 36878447  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 1486713 - 1486785
Alignment:
Q  232 accgacacctataattattttgaattatgtcatttct-caaattattatctgtgtcagagtgtcagtgtccgt 303  Q
    |||||||| ||||||||   |||||||||| |||| | |||||||||| ||||||||| |||||||| |||||    
T  1486713 accgacacttataattacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtatccgt 1486785  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 6414936 - 6414980
Alignment:
Q  161 aagcacggacactcctctgattatatgtgtctcggtgtcagacac 205  Q
    ||||||||||||||||| ||| | ||||||| |||||||||||||    
T  6414936 aagcacggacactcctcggatgaaatgtgtcgcggtgtcagacac 6414980  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 2525848 - 2525903
Alignment:
Q  232 accgacacctataattattttgaattatgtcattt-ctcaaattattatctgtgtc 286  Q
    |||||||| ||| ||||| |||||||||||||||| |||||||||||||| |||||    
T  2525848 accgacacatatgattatattgaattatgtcatttgctcaaattattatcggtgtc 2525903  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 295
Target Start/End: Original strand, 11665374 - 11665508
Alignment:
Q  161 aagcacggacactcctctgattatatgtgtctcggtgtcagacacacgtccgtttccgacacagacatgataccgacacctataattattttgaattatg 260  Q
    ||||||||||| |||||  |||| |||||| |||||||| |||||  || ||| | |||||| ||||||| | |||||| ||||||||   |||||||||    
T  11665374 aagcacggacattcctcgtattagatgtgtttcggtgtcggacacgtgt-cgtgttcgacaccgacatgacatcgacacttataattagactgaattatg 11665472  T
Q  261 tca-tttctcaaattattatctgtgtcagagtgtca 295  Q
    | | ||| |||||||||||  |||||||| ||||||    
T  11665473 tgattttttcaaattattagttgtgtcagcgtgtca 11665508  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 38134403 - 38134466
Alignment:
Q  225 acatgataccgacacctataattattttgaattatgtca-tttctcaaattattatctgtgtca 287  Q
    |||||| |||||||| ||| ||||  ||||||||||||| ||||||||||||||||| ||||||    
T  38134403 acatgagaccgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtca 38134466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 43250046 - 43249976
Alignment:
Q  234 cgacacctataattattttgaattatgtcattt-ctcaaattattatctgtgtcagagtgtcagtgtccgt 303  Q
    |||||| ||||||||   || |||||||||||| |||||||||||||| ||||| | ||||||||||||||    
T  43250046 cgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgt 43249976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 285
Target Start/End: Original strand, 18233604 - 18233656
Alignment:
Q  234 cgacacctataattattttgaattatgtca-tttctcaaattattatctgtgt 285  Q
    |||||||||||||||   |||||||||||| |||||||||||| |||||||||    
T  18233604 cgacacctataattacactgaattatgtcattttctcaaattactatctgtgt 18233656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 303
Target Start/End: Complemental strand, 7012192 - 7012049
Alignment:
Q  161 aagcacggacactcctctgattatatgtgtctcggtgtcagacacacgtccgtttccgacacagacatgataccgacacctataattattttgaattatg 260  Q
    |||||||||||||||||  ||||  |||  | ||||||| || || |||| || |||||||| ||||  | ||||| |||||| || |   |||||||||    
T  7012192 aagcacggacactcctcgcattaggtgttccccggtgtcggatacgcgtcggtgtccgacaccgacacaacaccgatacctatgatcacactgaattatg 7012093  T
Q  261 tcattt-ctcaaattattatctgtgtcagagtgtcagtgtccgt 303  Q
    |||||| |||||||||||||| ||||| | ||||| ||||||||    
T  7012092 tcattttctcaaattattatcggtgtcggcgtgtcggtgtccgt 7012049  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 19230315 - 19230381
Alignment:
Q  234 cgacacctataattattttgaattatgtca-tttctcaaattattatctgtgtcagagtgtcagtgt 299  Q
    |||||||||||||||  ||||||||||| | |||||||||||||||||| ||||   ||||||||||    
T  19230315 cgacacctataattacattgaattatgttattttctcaaattattatctatgtccatgtgtcagtgt 19230381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 278
Target Start/End: Original strand, 24613635 - 24613752
Alignment:
Q  161 aagcacggacactcctctgattatatgtgtctcggtgtcagacacacgtccgtttccgacacagacatgataccgacacctataattattttgaattatg 260  Q
    ||||||||||||||||  ||||| | |||||  ||||||||||||  || ||| || ||||| ||||||| |||||||| | || |||  ||||||||||    
T  24613635 aagcacggacactcctaggattagacgtgtcctggtgtcagacacgtgt-cgtgtctgacaccgacatgacaccgacacttgtacttacattgaattatg 24613733  T
Q  261 tca-tttctcaaattatta 278  Q
    | | |||||||||||||||    
T  24613734 tgattttctcaaattatta 24613752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 56049931 - 56049877
Alignment:
Q  232 accgacacctataattattttgaattatgtcatttctcaaattattatctgtgtc 286  Q
    |||||||| ||| ||||  ||||| |||||||||||||||||||||||| |||||    
T  56049931 accgacacatatgattacattgaactatgtcatttctcaaattattatcggtgtc 56049877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 47513372 - 47513323
Alignment:
Q  228 tgataccgacacctataattattttgaattatgtcatttctcaaattatt 277  Q
    |||||||||||| ||| ||||  || ||||||||||||||||||||||||    
T  47513372 tgataccgacacgtatgattacattaaattatgtcatttctcaaattatt 47513323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 2361920 - 2361964
Alignment:
Q  161 aagcacggacactcctctgattatatgtgtctcggtgtcagacac 205  Q
    |||||||||||||| || |||||  ||||||||||||||||||||    
T  2361920 aagcacggacactcgtcagattaggtgtgtctcggtgtcagacac 2361964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 299
Target Start/End: Original strand, 20743302 - 20743350
Alignment:
Q  252 tgaattatgtcattt-ctcaaattattatctgtgtcagagtgtcagtgt 299  Q
    ||||||||||||||| |||||||||||||| ||||| | ||||||||||    
T  20743302 tgaattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgt 20743350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 28000675 - 28000719
Alignment:
Q  161 aagcacggacactcctctgattatatgtgtctcggtgtcagacac 205  Q
    |||||||||||||| || |||||  ||||||||||||||||||||    
T  28000675 aagcacggacactcatcagattaggtgtgtctcggtgtcagacac 28000719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 303
Target Start/End: Complemental strand, 37077484 - 37077341
Alignment:
Q  161 aagcacggacactcctctgattatatgtgtctcggtgtcagacacacgtccgtttccgacacagacatgataccgacacctataattattttgaattatg 260  Q
    ||||||||||| ||||  |||||  |||||| | ||||| ||||  ||||||| | |||||| ||||||| |  ||||| ||| |||   ||||||||||    
T  37077484 aagcacggacattccttggattaggtgtgtccccgtgtcggacatgcgtccgtgtacgacaccgacatgacaatgacacatatgattccattgaattatg 37077385  T
Q  261 tcat-ttctcaaattattatctgtgtcagagtgtcagtgtccgt 303  Q
    | || |||||||||||||||| ||||| | |||||| |||||||    
T  37077384 ttatattctcaaattattatcggtgtcggcgtgtcactgtccgt 37077341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 24205047 - 24205117
Alignment:
Q  234 cgacacctataattattttgaattatgtcattt-ctcaaattattatctgtgtcagagtgtcagtgtccgt 303  Q
    |||||| ||||||||   || |||||||||||| |||||||||||||| ||||| | ||||||||||||||    
T  24205047 cgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgt 24205117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 300
Target Start/End: Complemental strand, 14829757 - 14829676
Alignment:
Q  219 acacagacatgataccgacacctataattattttgaattatgtcatttctcaaattattatctgtgtcagagtgtcagtgtc 300  Q
    |||| |||| || |||||||| | ||||||   |||||||||| |||| ||||||||||| ||||||| | |||||||||||    
T  14829757 acaccgacacgacaccgacacttgtaattaccatgaattatgtgatttttcaaattattagctgtgtcggcgtgtcagtgtc 14829676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 303
Target Start/End: Complemental strand, 21112 - 21026
Alignment:
Q  218 gacacagacatgataccgacacctataattattttgaattatgtcattt-ctcaaattattatctgtgtcagagtgtcagtgtccgt 303  Q
    ||||| |||| ||||||||||| |||||||||   || |||||| |||| |||||||||||| | |||||||  |||||||||||||    
T  21112 gacaccgacacgataccgacacatataattataccgacttatgtgattttctcaaattattaaccgtgtcagcatgtcagtgtccgt 21026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 23718081 - 23718009
Alignment:
Q  232 accgacacctataattattttgaattatgtca-tttctcaaattattatctgtgtcagagtgtcagtgtccgt 303  Q
    |||||||| ||||||||   |||||||||| | ||||||||||||||| | ||||| | ||||||||||||||    
T  23718081 accgacacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgt 23718009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 24105753 - 24105681
Alignment:
Q  232 accgacacctataattattttgaattatgtca-tttctcaaattattatctgtgtcagagtgtcagtgtccgt 303  Q
    |||||||| ||||||||   |||||||||| | ||||||||||||||| | ||||| | ||||||||||||||    
T  24105753 accgacacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgt 24105681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 37559032 - 37558960
Alignment:
Q  232 accgacacctataattattttgaattatgtcatttct-caaattattatctgtgtcagagtgtcagtgtccgt 303  Q
    |||||||| | ||||||  ||||||||||| |||| | |||||||||| ||||||| | ||||||||||||||    
T  37559032 accgacacttgtaattacattgaattatgtgatttttacaaattattagctgtgtcggcgtgtcagtgtccgt 37558960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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