View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15529_low_8 (Length: 236)
Name: NF15529_low_8
Description: NF15529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15529_low_8 |
 | |
|
| [»] scaffold0303 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0303 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: scaffold0303
Description:
Target: scaffold0303; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 13313 - 13528
Alignment:
| Q |
3 |
tcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtctaggtgttttgcccacccggatcagactacatgataaaggggttaattgtccaac |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
13313 |
tcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcaatgtgttttgcccacccggattagactacatgataaaggggttcattgtccaac |
13412 |
T |
|
| Q |
103 |
tgactgtgtaaattgcaattctggtcaggaagattttgctcatctgttcttttcatgttcctttgcgattcaagtatggacaagggccggtttatggact |
202 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13413 |
tgactgtgtaaattgaaattctggtcaggaagattttgctcacctgttcttttcatatccctttgcgattcaagtatggacaagggccggtttatggact |
13512 |
T |
|
| Q |
203 |
gatattgatttctctg |
218 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
13513 |
gatattgatttttctg |
13528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 28859904 - 28860116
Alignment:
| Q |
1 |
actcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtctaggtgttttgcccacccggatcagactacatgataaaggggttaattgtcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
28859904 |
actcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcgaggtgttttgcccacccggattagactacatgataaaggggttcattgtcca |
28860003 |
T |
|
| Q |
101 |
actgactgtgtaaattgcaattctggtcaggaagattttgctcatctgttcttttcatgttcctttgcgattcaagtatggacaagggccggtttatgga |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28860004 |
actgactgtgtaaattgcaattctagtcaggaagattttgctcacctattcttttcatgcccctttgcgattcaagtatggacaagggccgatttatgga |
28860103 |
T |
|
| Q |
201 |
ctgatattgattt |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28860104 |
ctgatattgattt |
28860116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 18119059 - 18119272
Alignment:
| Q |
5 |
aaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtctaggtgttttgcccacccggatcagactacatgataaaggggttaattgtccaactg |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
18119059 |
aaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcgaggtgttttgcccacccggattagactacattataaaggggttcgttgtccaactg |
18119158 |
T |
|
| Q |
105 |
actgtgtaaattgcaattctggtcaggaagattttgctcatctgttcttttcatgttcctttgcgattcaagtatggacaagggccggtttatggactga |
204 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18119159 |
actgtgtaaattgcaattctggtcagaaagattttgctcacctgttcttttcatttccctttgcgattcaagtatggacaagggccggtttatggactga |
18119258 |
T |
|
| Q |
205 |
tattgatttctctg |
218 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
18119259 |
tattgatttttctg |
18119272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 10770331 - 10770538
Alignment:
| Q |
1 |
actcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtctaggtgttttgcccacccggatcagactacatgataaaggggttaattgtcca |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||| |||| ||| |||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
10770331 |
actcaaagttccaccaaaagtgaagaacttggtttggcatatgtgtcgaggtttttcgcccacccggattagactacatgataaaggggttcattgtcca |
10770430 |
T |
|
| Q |
101 |
actgactgtgtaaattgcaattctggtcaggaagattttgctcatctgttcttttcatgttcctttgcgattcaagtatggacaagggccggtttatgga |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10770431 |
actgactgtgtaaattgcaattttggtcaggaagattttgctcatctgttcttttcatgtccctttgcgattcaagtatggacaagggccggtttatgga |
10770530 |
T |
|
| Q |
201 |
ctgatatt |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
10770531 |
ctgatatt |
10770538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 17753279 - 17753062
Alignment:
| Q |
1 |
actcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtctaggtgttttgcccacccggatcagactacatgataaaggggttaattgtcca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||| |||| |||||||||||||||| |||||||| |
|
|
| T |
17753279 |
actcaaagtcccaccaaaagtgaaaaacttggtttggcgtatgtgtcgaggtgttttgcccacccagattagaccacatgataaaggggttcattgtcca |
17753180 |
T |
|
| Q |
101 |
actgactgtgtaaattgcaattctggtcaggaagattttgctcatctgttcttttcatgttcctttgcgattcaagtatggacaagggccggtttatgga |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17753179 |
actgactgtgtaaattggaattctggtcaggatgattttgctcacctgttcttttcatgtacctttgcgattcaagtatggacaagggccgttttatgga |
17753080 |
T |
|
| Q |
201 |
ctgatattgatttctctg |
218 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
17753079 |
ctgatattgatttttctg |
17753062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 22737387 - 22737271
Alignment:
| Q |
97 |
tccaactgactgtgtaaattgcaattctggtcaggaagattttgctcatctgttcttttcatgttcctttgcgattcaagtatggacaagggccggttta |
196 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
22737387 |
tccaactgactgtgtaaattgctattctggtcgagaagagtttgctcatctgttcttttcatgtccctttgcgattcaactatggacaagggccggttta |
22737288 |
T |
|
| Q |
197 |
tggactgatattgattt |
213 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
22737287 |
tggactgatattgattt |
22737271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 22738753 - 22738653
Alignment:
| Q |
1 |
actcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtctaggtgttttgcccacccggatcagactacatgataaaggggttaattgtcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
22738753 |
actcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcgaggtgttttgcccacccggattagactacatgataaaggggttcattgtcca |
22738654 |
T |
|
| Q |
101 |
a |
101 |
Q |
| |
|
| |
|
|
| T |
22738653 |
a |
22738653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 199
Target Start/End: Original strand, 27492382 - 27492575
Alignment:
| Q |
5 |
aaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtctaggtgttttgcccacccggatcagactacatgataaaggggttaattgtccaactg |
104 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| ||||||| || |||||| || || | | ||| ||||||||| ||||| | |||||||||| |
|
|
| T |
27492382 |
aaagtcccacccaaggtgaagaacttggtttggcgaatgtgtcggagttgtttgccaacttgggttacacttcatgataaa-gggttcaatgtccaactg |
27492480 |
T |
|
| Q |
105 |
actgtgtaaattgcaattctggtcaggaagattttgctcatctgttcttttcatgttcctttgcgattcaagtatggacaagggccggtttatgg |
199 |
Q |
| |
|
||| ||| ||||| |||| || || ||||| ||||| ||||| || ||| | ||| | ||||||| ||||||||| |||||||| ||||||| |
|
|
| T |
27492481 |
actatgttaattgtgattccggccaagaagactttgcccatcttttttttgcttgtccttttgcgagtcaagtatgagcaagggccaatttatgg |
27492575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University