View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1552_low_1 (Length: 692)
Name: NF1552_low_1
Description: NF1552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1552_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 578; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 11 - 673
Target Start/End: Original strand, 5774304 - 5774958
Alignment:
| Q |
11 |
acatcatcatggaaagaagaaaggtgaaaaatcagagatgaagcacatgtgcgtgtgcagaaatttttcaaatgcctaggtgaaatactattatatatat |
110 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774304 |
acatcatcatggaaagaagaaaggttaaaaatcagagatgaagcacatgtgtgtgtgcagaaatttttcaaatgcctaggtgaaatactattatata--- |
5774400 |
T |
|
| Q |
111 |
aactttactcattcgattagttacattctaaataacacaaaatttccacaannnnnnnnnataactgacctgagtttctttaacagtgtatctctcaagt |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5774401 |
-actttactcattcgattagttacattctaaataacacaaaatttccacaattcctttttataactgacctgagtttctttaacagtgtatctctcaagt |
5774499 |
T |
|
| Q |
211 |
acggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttacattaaccagcaattcagcctcctgcaagcacgcacaca |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5774500 |
acggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttacattaaccagcaattcagcctcctgcaagcacgcataca |
5774599 |
T |
|
| Q |
311 |
ctaacaacagttacctcaaccataaacaaccaccacagaatttgattgatcgatcgatcgaatgatgaattacctgaaaaacttccaaatgatatttgga |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
5774600 |
ctaacaacagttacctcaaccataaacaaccaccacagaatttgattgattgatcgat----tgatgaattacctgaaaaacttccaaatgaaatttgga |
5774695 |
T |
|
| Q |
411 |
gtcgaactgagagatactgttccatgccatgttagtaaggctggtctggcaaacgatgatggccctgtagacattctccgagttcatgcgtttggtgtaa |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774696 |
gtcgaactgagagatactgttccatgccatgttagtaaggctggtctggcaaacgatgatggccctgtagacattctccgagttcatgcgtttggtgtaa |
5774795 |
T |
|
| Q |
511 |
gtcctgaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctggtcagagggattgtcctttttcgccttgttgatgacaaggtctt |
610 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774796 |
gtcctgaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctggtcagagggattgtcctttttcgccttgttgatgacaaggtctt |
5774895 |
T |
|
| Q |
611 |
ctctcttcatgtgctccccatatttctccttgaactcttctttcgacatgttaacctcaaaat |
673 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774896 |
ctctattcatgtgctccccatatttctccttgaactcttctttcgacatgttaacctcaaaat |
5774958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 171 - 673
Target Start/End: Original strand, 5768189 - 5768678
Alignment:
| Q |
171 |
ataactgacctgagtttctttaacagtgtatctctcaagtacggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatctt |
270 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| |
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| T |
5768189 |
ataactgacctgagtttctttaacggtgtatctctcgagtaaggttttcttctcattgtcggtcagcacctgatgttctggcacaagctcgtgatatctt |
5768288 |
T |
|
| Q |
271 |
acattaaccagcaattcagcctcctgcaagcacgcacacactaacaacagttacctcaaccataaacaaccaccacagaatttgattgatcgatcgatcg |
370 |
Q |
| |
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|| |||||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||| ||||||||||||| |||||||||||| ||| ||| |
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| T |
5768289 |
acgttaaccagcaattcagcctccttcaagaacgcatacactaacaacggttacctcaaccattaacaaccaccacaaaatttgattgattgatggat-- |
5768386 |
T |
|
| Q |
371 |
aatgatgaattacctgaaaaacttccaaatgatatttggagtcgaactgagagatactgttccatgccatgttagtaaggctggtctggcaaacgatgat |
470 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5768387 |
--tgatgaattacctgaaaaacttccaaatgaaatttggagtcgatttcagagag---------tgccatgttagtaaggctggtctggcaaacgatgat |
5768475 |
T |
|
| Q |
471 |
ggccctgtagacattctccgagttcatgcgtttggtgtaagtcctgaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctggtca |
570 |
Q |
| |
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||| |||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5768476 |
ggctctgtagacattctcggagttcatacgtttggtgcaagtcctgaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctggtca |
5768575 |
T |
|
| Q |
571 |
gagggattgtcctttttcgccttgttgatgacaaggtcttctctcttcatgtgctccccatatttctccttgaactcttctttcgacatgttaacctcaa |
670 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5768576 |
gagggattgtcctttttcgccttgttgatgacaaggtcttctctattcatgtgctccccatatttctccttgaactcttctttcgacatgttaacctcaa |
5768675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 442 - 659
Target Start/End: Original strand, 5775102 - 5775319
Alignment:
| Q |
442 |
ttagtaaggctggtctggcaaacgatgatggccctgtagacattctccgagttcatgcgtttggtgtaagtcctgaaggtgtggacgccaaccttctcat |
541 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||| || ||| ||| || |||||||||||||| |||||||||||| ||||||| |||| |
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| T |
5775102 |
ttagtaaggctggtctggcaaacgacgatggctctgtagacattgtcggaggacatacgattggtgtaagtccttaaggtgtggacgtcaaccttatcat |
5775201 |
T |
|
| Q |
542 |
cctccgggaagaagacataaatctggtcagagggattgtcctttttcgccttgttgatgacaaggtcttctctcttcatgtgctccccatatttctcctt |
641 |
Q |
| |
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||| || ||||| |||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||| || ||| |||||| ||||||| |
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| T |
5775202 |
tctcaggaaagaacacataaatctggtcagagggattgtcttttttggctttcttgatgacaaggtcttctctcttcaagttctcaccatatgtctcctt |
5775301 |
T |
|
| Q |
642 |
gaactcttctttcgacat |
659 |
Q |
| |
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|||||||| ||| ||||| |
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| T |
5775302 |
gaactcttgttttgacat |
5775319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 295
Target Start/End: Complemental strand, 465800 - 465679
Alignment:
| Q |
174 |
actgacctgagtttctttaacagtgtatctctcaagtacggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttaca |
273 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| | |||||||||||| ||||| | || | ||||||||| ||||||||| || | | ||| | |
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| T |
465800 |
actgacctgagtttccttgacagtgtatctctcaagcaaggttttcttctcggtgtcattgagaatctgatgttcaggcacaagcacatgctcttttata |
465701 |
T |
|
| Q |
274 |
ttaaccagcaattcagcctcct |
295 |
Q |
| |
|
||||||||||| || ||||||| |
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|
| T |
465700 |
ttaaccagcaactctgcctcct |
465679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 5768137 - 5768171
Alignment:
| Q |
116 |
tactcattcgattagttacattctaaataacacaa |
150 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| |
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| T |
5768137 |
tactcattcgattagtcacattctaaataacacaa |
5768171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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