View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1552_low_2 (Length: 470)
Name: NF1552_low_2
Description: NF1552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1552_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 144 - 461
Target Start/End: Original strand, 224820 - 225137
Alignment:
| Q |
144 |
caaaaatctcatccttttgcacaaatctatgaaataatgataaagaatatataggtataaaattgtaagtgtcttaagaagcaagcaaaatactaactaa |
243 |
Q |
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| T |
224820 |
caaagatctcatccttttgcacaaatctatgaaataatgataaagaatatataggtataaaattgtaagtgtcttaagaagcaagcaaaatactaactaa |
224919 |
T |
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| Q |
244 |
acttacatccccttcatgtgcaaggcgtttaagtaagcaaaaggtatgctgattttcttccaaattgtcaagaacagccagccagattcgagatacaagt |
343 |
Q |
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| T |
224920 |
acttacatccccttcatgtgcaaggcgtttaagtaagcaaaaggtatgctgattttcttccaaattgtcaagaacagccagccagattcgagatacaagt |
225019 |
T |
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| Q |
344 |
tcatgggctacgtctcttgacttgccgcaagcaataaactgatctgctaaataaaaacaaaatgaatgatcaaagttctaataactattaatatgaataa |
443 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
225020 |
tcatgggctacgtctcttgacttgccgcaagcaataaactgatctgctaaataaaaacaaaatgaatgatcaaagttctaataactattgatataaataa |
225119 |
T |
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| Q |
444 |
taacaacaatagtataat |
461 |
Q |
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|||||| |||| |||||| |
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| T |
225120 |
taacaataataatataat |
225137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 224638 - 224786
Alignment:
| Q |
1 |
ttttggcacatgccaacatatcataataatctacatggttgaagcaatcacggaaatctgtaaaaagcttctcaaacaccctccattgaactttgactga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
224638 |
ttttggcacatgccaacatatcataataatctacatggttgaagcaatcacggaaatctgtaaaaagcttctcaaacaccctccattgaactttgactga |
224737 |
T |
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| Q |
101 |
tctagtgtaaggatatggaagaaaaacctgctgaaagttattgcaaaaa |
149 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
224738 |
tctagtgtaaggatatggaagaaaaacctgctgaaagttattgcaaaaa |
224786 |
T |
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