View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1552_low_3 (Length: 445)

Name: NF1552_low_3
Description: NF1552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1552_low_3
NF1552_low_3
[»] chr4 (6 HSPs)
chr4 (1-445)||(45676321-45676782)
chr4 (42-113)||(10550069-10550138)
chr4 (47-113)||(14508729-14508795)
chr4 (184-241)||(14508978-14509036)
chr4 (81-116)||(41848394-41848429)
chr4 (65-103)||(31322595-31322633)
[»] chr5 (10 HSPs)
chr5 (1-113)||(7400520-7400632)
chr5 (1-113)||(35429958-35430070)
chr5 (1-113)||(41340995-41341107)
chr5 (1-113)||(35428375-35428490)
chr5 (1-101)||(13661674-13661774)
chr5 (173-241)||(13662058-13662126)
chr5 (183-241)||(41341287-41341346)
chr5 (21-113)||(7658948-7659040)
chr5 (167-215)||(7659193-7659241)
chr5 (65-113)||(18009216-18009264)
[»] chr6 (7 HSPs)
chr6 (1-113)||(21118482-21118594)
chr6 (1-113)||(14763881-14763993)
chr6 (1-113)||(14766458-14766570)
chr6 (28-113)||(21118764-21118849)
chr6 (26-110)||(32342065-32342149)
chr6 (64-101)||(20727499-20727536)
chr6 (166-241)||(20727681-20727755)
[»] chr1 (8 HSPs)
chr1 (1-113)||(52022081-52022193)
chr1 (2-107)||(6139774-6139879)
chr1 (54-113)||(43834965-43835024)
chr1 (55-113)||(6138206-6138264)
chr1 (173-241)||(6138434-6138503)
chr1 (21-101)||(2595366-2595446)
chr1 (42-101)||(5397343-5397402)
chr1 (173-241)||(52022366-52022435)
[»] chr8 (4 HSPs)
chr8 (1-113)||(392361-392473)
chr8 (21-113)||(7278105-7278197)
chr8 (164-241)||(7284417-7284495)
chr8 (180-221)||(7275105-7275146)
[»] chr7 (8 HSPs)
chr7 (1-113)||(5448914-5449026)
chr7 (1-113)||(5439904-5440016)
chr7 (32-113)||(15589841-15589922)
chr7 (21-113)||(15588707-15588799)
chr7 (173-241)||(5448673-5448744)
chr7 (65-113)||(5438911-5438959)
chr7 (173-241)||(5439663-5439734)
chr7 (65-113)||(5447921-5447969)
[»] chr3 (12 HSPs)
chr3 (1-113)||(38183158-38183270)
chr3 (33-113)||(17731119-17731199)
chr3 (33-113)||(19032350-19032430)
chr3 (32-107)||(1026785-1026860)
chr3 (28-107)||(3371390-3371469)
chr3 (173-241)||(17730878-17730947)
chr3 (173-241)||(19032109-19032178)
chr3 (166-227)||(21344525-21344586)
chr3 (64-113)||(21344734-21344783)
chr3 (75-113)||(49582636-49582674)
chr3 (173-241)||(43979457-43979526)
chr3 (173-239)||(1027037-1027105)
[»] chr2 (6 HSPs)
chr2 (1-102)||(34225076-34225177)
chr2 (42-107)||(20594615-20594680)
chr2 (26-113)||(4660161-4660247)
chr2 (166-220)||(33300954-33301008)
chr2 (173-221)||(20594860-20594908)
chr2 (42-104)||(33301074-33301136)


Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 45676782 - 45676321
Alignment:
Q  1 tattagttattggtgattatgtcctacatcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgca 100  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  45676782 tattagctattggtgattatgtcctacatcgcttagtttagtgaagcaagggaaaggctaagactatatattgaacctaggttctttgtttttagatgca 45676683  T
Q  101 ccagtcagtagcatttgacttagagtgtggtcggtttagacaacggtcgtggnnnnnnnnnnnc-aattttaaagttttcacattatattcttgtattat 199  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||           | ||||||||| ||| ||| |||||||||||| ||||    
T  45676682 ccagccagtagcatttgacttagagtgtggtcggtttagacaacggtcgtggttttttttcttccaattttaaattttccacgttatattcttgtgttat 45676583  T
Q  200 gattgtgtttatttttcttcttgaacc-tgttatttcctaacatattttaggtctataaataaacatggtgggcccatttcagagggagagtccatgtcc 298  Q
     ||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  45676582 aattgtgtttatttttcttcttcaaccctgttatttcctaacatgttttaggtctataaataaacatggtgggcccatttcagaggaagagtccatgtcc 45676483  T
Q  299 aaagtataagaatactaatccaaggctaataagaatctttttaaaaattcattgatagagaatt---------------atgcattactgcaacttatac 383  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||               |||||||||| ||||||||||    
T  45676482 aaagtataagaatactaatccaaggctaataagaatttttttaaaaattcgttgatagagaattatgcttacaatagttatgcattactacaacttatac 45676383  T
Q  384 ctaaattaccgtacaaagaaccaacttgtaactaaatttcaattgaacacataagatcagta 445  Q
    |||||||||||||  || |||||||||||| |||||||||||||||| ||||||||||||||    
T  45676382 ctaaattaccgtaagaaaaaccaacttgtacctaaatttcaattgaaaacataagatcagta 45676321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 10550138 - 10550069
Alignment:
Q  42 tgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgcaccagtcagtagca 113  Q
    ||||||||||| || |||||| ||||||  |||||||| |||||||||||||||||||||||||||||||||    
T  10550138 tgaagcaaggggaaaactaaggctatat--tgaacctaggttctttgtttttagatgcaccagtcagtagca 10550069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 14508729 - 14508795
Alignment:
Q  47 caagggaaagactaagactatatattgaacctaagttctttgtttttagatgcaccagtcagtagca 113  Q
    |||||| ||||| ||| |||||||||||||||| |||||| ||||||||||| ||||||||||||||    
T  14508729 caaggggaagaccaaggctatatattgaacctaggttcttagtttttagatgtaccagtcagtagca 14508795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 14508978 - 14509036
Alignment:
Q  184 tatattcttgtattatgattgtgtttatttttcttcttga-acctgttatttcctaaca 241  Q
    ||||||||||| || ||||||||||||||||||||||| |  |||||||||||||||||    
T  14508978 tatattcttgtgttgtgattgtgtttatttttcttcttcagccctgttatttcctaaca 14509036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 116
Target Start/End: Complemental strand, 41848429 - 41848394
Alignment:
Q  81 gttctttgtttttagatgcaccagtcagtagcattt 116  Q
    |||||||||||||||||||| |||||||||||||||    
T  41848429 gttctttgtttttagatgcatcagtcagtagcattt 41848394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 31322595 - 31322633
Alignment:
Q  65 tatatattgaacctaagttctttgtttttagatgcacca 103  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  31322595 tatatattggacctaggttctttgtttttagatgcacca 31322633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 7400632 - 7400520
Alignment:
Q  1 tattagttattggtgattatgtcctacatcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgca 100  Q
    |||||||||||||||||||||||| ||||||||||||||| || |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||    
T  7400632 tattagttattggtgattatgtccgacatcgcttagtttagtggagcaaggggaagaccaagactatatattgaacctaggttctttgtttttagatgca 7400533  T
Q  101 ccagtcagtagca 113  Q
    || ||||||||||    
T  7400532 ccggtcagtagca 7400520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 35430070 - 35429958
Alignment:
Q  1 tattagttattggtgattatgtcctacatcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgca 100  Q
    |||||||||||||||||||||||| |||||||||| |||| ||||||||||| ||||| ||||||||||||||||||||  ||||||||||||||| |||    
T  35430070 tattagttattggtgattatgtccgacatcgcttattttagtgaagcaaggggaagaccaagactatatattgaacctagtttctttgtttttagaagca 35429971  T
Q  101 ccagtcagtagca 113  Q
    |||||||||||||    
T  35429970 ccagtcagtagca 35429958  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 41340995 - 41341107
Alignment:
Q  1 tattagttattggtgattatgtcctacatcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgca 100  Q
    ||||||||||||||| |||||||| ||||||||||||||| ||||||||||| ||||| ||   |||||||| ||||||  |||||||||||||||||||    
T  41340995 tattagttattggtggttatgtcccacatcgcttagtttagtgaagcaaggggaagaccaaagttatatattaaacctagtttctttgtttttagatgca 41341094  T
Q  101 ccagtcagtagca 113  Q
    |||||||||||||    
T  41341095 ccagtcagtagca 41341107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 35428490 - 35428375
Alignment:
Q  1 tattagttattggtgattatgtcctacatcgcttagtttaatgaagcaagggaaagactaagactatatattgaacc---taagttctttgtttttagat 97  Q
    |||||||||||||||||||||||| | |||||||| |||| |||||||| || ||||| ||| ||||||||||||||   ||| ||||||||||||||||    
T  35428490 tattagttattggtgattatgtcccaaatcgcttattttagtgaagcaatgggaagaccaaggctatatattgaacctagtaatttctttgtttttagat 35428391  T
Q  98 gcaccagtcagtagca 113  Q
    ||||||||||||||||    
T  35428390 gcaccagtcagtagca 35428375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 13661674 - 13661774
Alignment:
Q  1 tattagttattggtgattatgtcctacatcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgca 100  Q
    ||||||||||| |||||||||| | ||||||||||||||| ||||||||||| ||||| ||   |||||||||||| |  |||||||||| | |||||||    
T  13661674 tattagttattagtgattatgttccacatcgcttagtttagtgaagcaaggggaagaccaatgttatatattgaactttggttctttgttatcagatgca 13661773  T
Q  101 c 101  Q
    |    
T  13661774 c 13661774  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 13662058 - 13662126
Alignment:
Q  173 agttttcacattatattcttgtattatgattgtgtttatttttcttcttgaacctgttatttcctaaca 241  Q
    ||||||||||||||||||||||    | ||||| ||||||||||||||| | |||| ||||||||||||    
T  13662058 agttttcacattatattcttgtgcagtaattgtatttatttttcttcttcatcctgctatttcctaaca 13662126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 41341287 - 41341346
Alignment:
Q  183 ttatattcttgtattatgattgtgtttatttttcttcttga-acctgttatttcctaaca 241  Q
    |||||||||||| || ||||||||||||||||||||||| |  ||| |||||||||||||    
T  41341287 ttatattcttgtgttgtgattgtgtttatttttcttcttcagccctattatttcctaaca 41341346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 7658948 - 7659040
Alignment:
Q  21 gtcctacatcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgcaccagtcagtagca 113  Q
    ||||||||||||||||| |  || ||||||   ||||| ||  ||||||||||||  || |||||||||||| ||||| |||||| |||||||    
T  7658948 gtcctacatcgcttagtgtggtggagcaagacgaagaccaatgctatatattgaatttaggttctttgttttcagatgtaccagttagtagca 7659040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 7659193 - 7659241
Alignment:
Q  167 ttttaaagttttcacattatattcttgtattatgattgtgtttattttt 215  Q
    ||||||||||| |||||||||||||||| || ||||| || ||||||||    
T  7659193 ttttaaagtttccacattatattcttgtgttgtgattatgcttattttt 7659241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 18009216 - 18009264
Alignment:
Q  65 tatatattgaacctaagttctttgtttttagatgcaccagtcagtagca 113  Q
    ||||||||| |||||  ||| ||||||||| ||||||||||||||||||    
T  18009216 tatatattggacctagattcgttgtttttaaatgcaccagtcagtagca 18009264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 21118594 - 21118482
Alignment:
Q  1 tattagttattggtgattatgtcctacatcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgca 100  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||| | ||| | ||| ||||||||||||||||  |||||||||||||||||||    
T  21118594 tattagttattggtgattatgtcccacatcgcttagtttagtgaagcaagaggaaggccaaggctatatattgaacctagtttctttgtttttagatgca 21118495  T
Q  101 ccagtcagtagca 113  Q
    ||||||| |||||    
T  21118494 ccagtcaatagca 21118482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 14763993 - 14763881
Alignment:
Q  1 tattagttattggtgattatgtcctacatcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgca 100  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||  |||| ||||||| |||  ||||||||||||||||| |    
T  14763993 tattagttattggtgattatgtcccacatcgcttagtttagtgaagcaaggggaagaccaaagctatttattgaatctagtttctttgtttttagatgta 14763894  T
Q  101 ccagtcagtagca 113  Q
    |||||||||||||    
T  14763893 ccagtcagtagca 14763881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 14766570 - 14766458
Alignment:
Q  1 tattagttattggtgattatgtcctacatcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgca 100  Q
    |||||||||||||||||||||||| ||||| ||||||||| ||||||||||  ||||| ||| ||||||||||||||||  || ||||||||||||||||    
T  14766570 tattagttattggtgattatgtccaacatcacttagtttagtgaagcaaggagaagaccaaggctatatattgaacctagtttttttgtttttagatgca 14766471  T
Q  101 ccagtcagtagca 113  Q
    | ||||| |||||    
T  14766470 ctagtcaatagca 14766458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 21118849 - 21118764
Alignment:
Q  28 atcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgcaccagtcagtagca 113  Q
    ||||||||||||| ||||||||| | ||| | ||| ||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  21118849 atcgcttagtttagtgaagcaagaggaaggccaaggctatatattgaacctagtttctttgtttttagatgcaccagtcagtagca 21118764  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 32342065 - 32342149
Alignment:
Q  26 acatcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgcaccagtcagta 110  Q
    |||||| |||||||  |||||||| || ||||| ||| ||||||||||||  ||||||||||||||||||||||||| |||||||    
T  32342065 acatcggttagtttggtgaagcaaagggaagaccaaggctatatattgaatataagttctttgtttttagatgcaccggtcagta 32342149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 20727499 - 20727536
Alignment:
Q  64 ctatatattgaacctaagttctttgtttttagatgcac 101  Q
    |||||||||||||||| |||||||||||||||||||||    
T  20727499 ctatatattgaacctatgttctttgtttttagatgcac 20727536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 20727681 - 20727755
Alignment:
Q  166 attttaaagttttcacattatattcttgtattatgattgtgtttatttttcttcttgaac-ctgttatttcctaaca 241  Q
    |||||| ||||| |||||||||||||||| || ||||  ||||||||||| ||||| | | ||||||||||||||||    
T  20727681 attttagagtttccacattatattcttgtgttgtgat--tgtttattttttttcttcagctctgttatttcctaaca 20727755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 52022081 - 52022193
Alignment:
Q  1 tattagttattggtgattatgtcctacatcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgca 100  Q
    |||||||||||||||||||||||| |||| |||||||||| ||||| ||||| ||||| ||| ||||||||||||||||  |||||||||||||||||||    
T  52022081 tattagttattggtgattatgtcccacattgcttagtttagtgaagtaaggggaagaccaaggctatatattgaacctagtttctttgtttttagatgca 52022180  T
Q  101 ccagtcagtagca 113  Q
    ||||||| |||||    
T  52022181 ccagtcattagca 52022193  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 6139774 - 6139879
Alignment:
Q  2 attagttattggtgattatgtcctacatcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgcac 101  Q
    ||||||||||| ||||||||| | ||| ||||||||||| ||||||||||| ||||| ||| ||||||||||||| ||  ||||||||||||||||||||    
T  6139774 attagttattgatgattatgttccacaccgcttagtttagtgaagcaaggggaagaccaaggctatatattgaacatagtttctttgtttttagatgcac 6139873  T
Q  102 cagtca 107  Q
    | ||||    
T  6139874 cggtca 6139879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 43834965 - 43835024
Alignment:
Q  54 aagactaagactatatattgaacctaagttctttgtttttagatgcaccagtcagtagca 113  Q
    ||||||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||    
T  43834965 aagactaaggctatatattgaacctaagttcttagttttaagatgcatcagtcagtagca 43835024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 6138206 - 6138264
Alignment:
Q  55 agactaagactatatattgaacctaagttctttgtttttagatgcaccagtcagtagca 113  Q
    |||| ||||||||||||||||||||  |||||||||||| |||||||||||||||||||    
T  6138206 agaccaagactatatattgaacctagtttctttgttttttgatgcaccagtcagtagca 6138264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 6138434 - 6138503
Alignment:
Q  173 agttttcacattatattcttgtattatgattgtgtttatttttcttcttga-acctgttatttcctaaca 241  Q
    ||||| ||| |||||||||||| || ||||||||| ||||||||||||| |  |||||||||||||||||    
T  6138434 agtttccacgttatattcttgtgttgtgattgtgtatatttttcttcttcagccctgttatttcctaaca 6138503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 2595446 - 2595366
Alignment:
Q  21 gtcctacatcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgcac 101  Q
    |||||||||| |||||| |  ||||| ||||| |||||  ||||||||||||  || || |||||||||||||||||||||    
T  2595446 gtcctacatcacttagtgtggtgaagtaaggggaagacctagactatatattagacttaggttctttgtttttagatgcac 2595366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 5397343 - 5397402
Alignment:
Q  42 tgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgcac 101  Q
    |||||||| || ||||| ||| |||||||||  ||||| |||||||||||||||||||||    
T  5397343 tgaagcaaagggaagaccaaggctatatattagacctaggttctttgtttttagatgcac 5397402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 52022366 - 52022435
Alignment:
Q  173 agttttcacattatattcttgtattatgattgtgtttatttttcttcttgaa-cctgttatttcctaaca 241  Q
    ||||| ||| |||||| ||||| || |||||||| |||||||||||||| || ||| |||||||||||||    
T  52022366 agtttccacgttatatccttgtgttgtgattgtgcttatttttcttcttcaaccctattatttcctaaca 52022435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 392473 - 392361
Alignment:
Q  1 tattagttattggtgattatgtcctacatcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgca 100  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||| ||||||||||||| ||  |||||||||||||||| ||    
T  392473 tattagttattggtgattatgtcccacatcgcttagtttagtgaagcaaggggaagaccaaggctatatattgaacgtagtttctttgtttttagataca 392374  T
Q  101 ccagtcagtagca 113  Q
     |||| |||||||    
T  392373 tcagttagtagca 392361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 7278197 - 7278105
Alignment:
Q  21 gtcctacatcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgcaccagtcagtagca 113  Q
    ||||||||||||||||| |  |||||||| || | ||| | |||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  7278197 gtcctacatcgcttagtgtggtgaagcaatgggaggaccatgactatatattggacctaggttctttgtttgtagatgcaccagtcagtagca 7278105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 7284495 - 7284417
Alignment:
Q  164 caattttaaagttttcacattatattcttgtattatgattgtgtttatttttcttcttgaac-ctgttatttcctaaca 241  Q
    ||||||| |||||| ||| |||||||||||| |||||||| || |||||||||||||| | | |||||||||| |||||    
T  7284495 caattttgaagtttccacgttatattcttgtgttatgattatgcttatttttcttcttcagctctgttatttcttaaca 7284417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 7275146 - 7275105
Alignment:
Q  180 acattatattcttgtattatgattgtgtttatttttcttctt 221  Q
    ||||||||||||| |||| |||||||| ||||||||||||||    
T  7275146 acattatattcttatattgtgattgtgcttatttttcttctt 7275105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 5449026 - 5448914
Alignment:
Q  1 tattagttattggtgattatgtcctacatcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgca 100  Q
    |||||| ||||||||||||||| | ||||||||||||||| ||||||||||| || || ||  ||||||||||||||||  |||||||||||||||||||    
T  5449026 tattagctattggtgattatgttccacatcgcttagtttagtgaagcaaggggaataccaatgctatatattgaacctagtttctttgtttttagatgca 5448927  T
Q  101 ccagtcagtagca 113  Q
    |||||||||||||    
T  5448926 ccagtcagtagca 5448914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 5440016 - 5439904
Alignment:
Q  1 tattagttattggtgattatgtcctacatcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgca 100  Q
    |||||| ||||||||||||||| | ||||||||||||||| ||||||||||| || || ||  ||||||||||||||||  || ||||||||||||||||    
T  5440016 tattagctattggtgattatgttccacatcgcttagtttagtgaagcaaggggaataccaatgctatatattgaacctagtttatttgtttttagatgca 5439917  T
Q  101 ccagtcagtagca 113  Q
    |||||||||||||    
T  5439916 ccagtcagtagca 5439904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 15589922 - 15589841
Alignment:
Q  32 cttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgcaccagtcagtagca 113  Q
    ||||||||  ||||||||||| ||||| ||| |||||||||||| ||| ||||||||| |||||||||||  ||||||||||    
T  15589922 cttagtttggtgaagcaaggggaagaccaaggctatatattgaatctaggttctttgtatttagatgcacaggtcagtagca 15589841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 15588799 - 15588707
Alignment:
Q  21 gtcctacatcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgcaccagtcagtagca 113  Q
    |||| ||||| ||||||||  ||||||||| | ||||| ||| |||||||||||   || |||||||||||||||||||||| ||||||||||    
T  15588799 gtcccacatcacttagtttggtgaagcaagaggaagaccaaggctatatattgatggtacgttctttgtttttagatgcacctgtcagtagca 15588707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 5448744 - 5448673
Alignment:
Q  173 agttttcacattatattcttgta-ttatgattgtgttta-tttttcttcttgaa-cctgttatttcctaaca 241  Q
    ||||| ||||||||||||||||| || |||||||||||| ||||||||||| || |||||||||||||||||    
T  5448744 agtttccacattatattcttgtatttgtgattgtgtttattttttcttcttcaaccctgttatttcctaaca 5448673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 5438959 - 5438911
Alignment:
Q  65 tatatattgaacctaagttctttgtttttagatgcaccagtcagtagca 113  Q
    |||||||||||| ||  |||||||||||||||||||||||||| |||||    
T  5438959 tatatattgaacatagtttctttgtttttagatgcaccagtcaatagca 5438911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 5439734 - 5439663
Alignment:
Q  173 agttttcacattatattcttgtatta-tgattgtgtttattttt-cttcttgaacc-tgttatttcctaaca 241  Q
    ||||| ||| |||||||||||||||  ||||||||||||||||| |||||| |||| |||||||||||||||    
T  5439734 agtttccacgttatattcttgtatttgtgattgtgtttattttttcttcttcaaccctgttatttcctaaca 5439663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 5447969 - 5447921
Alignment:
Q  65 tatatattgaacctaagttctttgtttttagatgcaccagtcagtagca 113  Q
    |||||||||||| ||  ||||||||| |||||||||||||||| |||||    
T  5447969 tatatattgaacatagtttctttgttcttagatgcaccagtcaatagca 5447921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 38183270 - 38183158
Alignment:
Q  1 tattagttattggtgattatgtcctacatcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgca 100  Q
    |||||||||||||||| ||| | | ||||||||||||||| ||||||||||  ||||| ||| |||||||||||| |||  |||||||||||||||||||    
T  38183270 tattagttattggtgactatattccacatcgcttagtttagtgaagcaaggtgaagaccaaggctatatattgaatctagtttctttgtttttagatgca 38183171  T
Q  101 ccagtcagtagca 113  Q
    |||||||||||||    
T  38183170 ccagtcagtagca 38183158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 17731199 - 17731119
Alignment:
Q  33 ttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgcaccagtcagtagca 113  Q
    |||||||| ||||||||||| ||| | ||| ||||||||||||||||  |||||| || ||||||||||||||||||||||    
T  17731199 ttagtttagtgaagcaaggggaaggccaaggctatatattgaacctagtttctttattgttagatgcaccagtcagtagca 17731119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 19032430 - 19032350
Alignment:
Q  33 ttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgcaccagtcagtagca 113  Q
    |||||||| ||||||||||| ||| | ||| ||||||||||||||||  |||||| || ||||||||||||||||||||||    
T  19032430 ttagtttagtgaagcaaggggaaggccaaggctatatattgaacctagtttctttattgttagatgcaccagtcagtagca 19032350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 1026785 - 1026860
Alignment:
Q  32 cttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgcaccagtca 107  Q
    ||||||||| ||||||||||| || || ||| |||||||| |||| || |||||||||||||||||||||||||||    
T  1026785 cttagtttagtgaagcaaggggaataccaaggctatatatcgaacgtaggttctttgtttttagatgcaccagtca 1026860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 3371390 - 3371469
Alignment:
Q  28 atcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgcaccagtca 107  Q
    ||||||||||||  |||||||| || ||||| ||| ||||||||| |||||| |||| ||||||||||||||| ||||||    
T  3371390 atcgcttagtttggtgaagcaaagggaagaccaaggctatatattaaacctaggttccttgtttttagatgcatcagtca 3371469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 17730947 - 17730878
Alignment:
Q  173 agttttcacattatattcttgtattatgattgtgtttatttttcttcttgaa-cctgttatttcctaaca 241  Q
    ||||| ||| |||||||||||| || |||||||||||||||| |||||| || |||||||||||||||||    
T  17730947 agtttccacgttatattcttgtgttgtgattgtgtttattttgcttcttcaaccctgttatttcctaaca 17730878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 19032178 - 19032109
Alignment:
Q  173 agttttcacattatattcttgtattatgattgtgtttatttttcttcttgaa-cctgttatttcctaaca 241  Q
    ||||| ||| |||||||||||| || |||||||||||||||| |||||| || |||||||||||||||||    
T  19032178 agtttccacgttatattcttgtgttgtgattgtgtttattttgcttcttcaaccctgttatttcctaaca 19032109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 21344586 - 21344525
Alignment:
Q  166 attttaaagttttcacattatattcttgtattatgattgtgtttatttttcttcttgaacct 227  Q
    |||||| ||||||||| |||||||||||| || |||||||| |||||||||||||| |||||    
T  21344586 attttagagttttcacgttatattcttgtgttgtgattgtgcttatttttcttcttcaacct 21344525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 21344783 - 21344734
Alignment:
Q  64 ctatatattgaacctaagttctttgtttttagatgcaccagtcagtagca 113  Q
    |||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  21344783 ctatatattgaacctaggttatttgtttttagatgcaccaatcagtagca 21344734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 49582636 - 49582674
Alignment:
Q  75 acctaagttctttgtttttagatgcaccagtcagtagca 113  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  49582636 acctaagttctttgtttttagatgcattagtcagtagca 49582674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 43979457 - 43979526
Alignment:
Q  173 agttttcacattatattcttgtattatgattgtgtttatttttcttcttgaacc-tgttatttcctaaca 241  Q
    ||||| ||| |||||||||||| |  | ||||||||||||||||||||| | || |||||||||||||||    
T  43979457 agtttccacgttatattcttgtgtagttattgtgtttatttttcttcttcagccatgttatttcctaaca 43979526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 1027037 - 1027105
Alignment:
Q  173 agttttcacattatattcttgtattatgattgtgttta-tttttcttcttgaa-cctgttatttcctaa 239  Q
    ||||| ||| |||||||| |||||  |||||||||||| ||||||||||| || |||||||||||||||    
T  1027037 agtttacacgttatattcctgtatagtgattgtgtttattttttcttcttcaaccctgttatttcctaa 1027105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 34225177 - 34225076
Alignment:
Q  1 tattagttattggtgattatgtcctacatcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgca 100  Q
    |||||||||||| |||||||||||||||||||||| |||| | ||  ||||| || |  || |||||||||| ||||||| |||||||||||||||||||    
T  34225177 tattagttattgatgattatgtcctacatcgcttaatttagtaaaataaggggaaaatcaaaactatatattaaacctaaattctttgtttttagatgca 34225078  T
Q  101 cc 102  Q
    ||    
T  34225077 cc 34225076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 20594615 - 20594680
Alignment:
Q  42 tgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgcaccagtca 107  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||| ||||    
T  20594615 tgaagcaaggggaagaccaagactatatattgaacctaggttctttatttttagatgcaccggtca 20594680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 4660247 - 4660161
Alignment:
Q  26 acatcgcttagtttaatgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgcaccagtcagtagca 113  Q
    ||||||||||||||  ||||||||||| ||||| ||  ||||||||||||||||  |||||||||||| |||||||| ||||||||||    
T  4660247 acatcgcttagtttggtgaagcaaggggaagaccaatgctatatattgaacctagtttctttgttttt-gatgcaccggtcagtagca 4660161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 33301008 - 33300954
Alignment:
Q  166 attttaaagttttcacattatattcttgtattatgattgtgtttatttttcttct 220  Q
    |||||||||||||||| |||||||||||| || ||||||||||||||||||||||    
T  33301008 attttaaagttttcacgttatattcttgtgttgtgattgtgtttatttttcttct 33300954  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 20594860 - 20594908
Alignment:
Q  173 agttttcacattatattcttgtattatgattgtgtttatttttcttctt 221  Q
    ||||||||| |||||||||||| || |||||||||||||||||||||||    
T  20594860 agttttcacgttatattcttgtgttgtgattgtgtttatttttcttctt 20594908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 33301136 - 33301074
Alignment:
Q  42 tgaagcaagggaaagactaagactatatattgaacctaagttctttgtttttagatgcaccag 104  Q
    ||||| ||||| ||||| ||| |||||||||||||  | |||||||||||||||||| |||||    
T  33301136 tgaagtaaggggaagaccaaggctatatattgaactcatgttctttgtttttagatgtaccag 33301074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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