View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1552_low_5 (Length: 360)
Name: NF1552_low_5
Description: NF1552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1552_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 15 - 345
Target Start/End: Original strand, 6753820 - 6754150
Alignment:
| Q |
15 |
acttaacatggaagaggctaacttgcataaagcataccaggaagtcctaaaacaagaagaactcctttggtatcaaaaatctagagaaaagtgggtgaag |
114 |
Q |
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| T |
6753820 |
acttaacatggaagaggctaacttgcataaagcataccaggaagtcctaaaacaagaagaactcctttggtatcaaaaatctagagaaaagtgggtgaag |
6753919 |
T |
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| Q |
115 |
ttgggggatagaaataacaaaatttttcatacccaaactgtgatcagaagaaagagaaacaagatccaaggactccatcttgatgatggctcatggtgta |
214 |
Q |
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| T |
6753920 |
ttgggggatagaaataacaaattttttcatacccaaactgtgatcagaagaaagagaaacaagatccaaggactccatcttgatgatggctcatggtgca |
6754019 |
T |
|
| Q |
215 |
ctagtgatgagaaacttcagcaggtagctatcactaactatcgtgagttattccataaagatgattctgttactcctcaaagcctgtcagttgagttatt |
314 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
6754020 |
ctagtgatgagaaacttcagcaggtagctatcacttactatcgtgagttattccataaagatgattctgttactcctcaaagcttgtcagttgagctatt |
6754119 |
T |
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| Q |
315 |
gccgcaacttaaccaacatgggtggaatact |
345 |
Q |
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| T |
6754120 |
gccgcaacttaaccaacatgggtggaatact |
6754150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 345
Target Start/End: Complemental strand, 1810714 - 1810406
Alignment:
| Q |
15 |
acttaacatggaagaggctaacttgcataaagcataccaggaagtcctaaaacaagaagaactcctttggtatcaaaaatctagagaaaagtgggtgaag |
114 |
Q |
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| T |
1810714 |
acttaacatggaaaaggctaacttgcataaagcataccaggaagtcctaaaacaagaagagctcctttggtatcaaaaatctagagaaaagtgggtgaag |
1810615 |
T |
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| Q |
115 |
ttgggggatagaaataacaaaatttttcatacccaaactgtgatcagaagaaagagaaacaagatccaaggactccatcttgatgatggctcatggtgta |
214 |
Q |
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| T |
1810614 |
ttgggggatagaaataacaaactttttcataccca----------------------aacaagatccaaggactccatcttgatgatggctcgtggtgta |
1810537 |
T |
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| Q |
215 |
ctagtgatgagaaacttcagcaggtagctatcactaactatcgtgagttattccataaagatgattctgttactcctcaaagcctgtcagttgagttatt |
314 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
1810536 |
ctagtgatgagaaacttcaacaggtagctatcacttactatcgtgagttattccataaagatgattatgttactcctcaaagcttgtcagttgagttatt |
1810437 |
T |
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| Q |
315 |
gccgcaacttaaccaacatgggtggaatact |
345 |
Q |
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| T |
1810436 |
gccgcaacttaaccaacatgggcggaatact |
1810406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 7588572 - 7588535
Alignment:
| Q |
79 |
ctttggtatcaaaaatctagagaaaagtgggtgaagtt |
116 |
Q |
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| T |
7588572 |
ctttggtatcaaaaatccagagaaaagtgggttaagtt |
7588535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 26433650 - 26433593
Alignment:
| Q |
67 |
caagaagaactcctttggtatcaaaaatctagagaaaagtgggtgaagttgggggata |
124 |
Q |
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||||||||| | |||||||||||||||||| ||||||| ||||||||||| ||||||| |
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| T |
26433650 |
caagaagaaatgctttggtatcaaaaatctcgagaaaaatgggtgaagtttggggata |
26433593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 11896343 - 11896389
Alignment:
| Q |
67 |
caagaagaactcctttggtatcaaaaatctagagaaaagtgggtgaa |
113 |
Q |
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||||||||| | ||||||||||||||||| |||||||| |||||||| |
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| T |
11896343 |
caagaagaaatgctttggtatcaaaaatcaagagaaaaatgggtgaa |
11896389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 23133537 - 23133491
Alignment:
| Q |
67 |
caagaagaactcctttggtatcaaaaatctagagaaaagtgggtgaa |
113 |
Q |
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||||||||| | ||||||||||||||||| |||||||| |||||||| |
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| T |
23133537 |
caagaagaaatgctttggtatcaaaaatcaagagaaaaatgggtgaa |
23133491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 20284044 - 20284090
Alignment:
| Q |
67 |
caagaagaactcctttggtatcaaaaatctagagaaaagtgggtgaa |
113 |
Q |
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||||||||| | ||||||||||||||||| |||||||| |||||||| |
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| T |
20284044 |
caagaagaaatgctttggtatcaaaaatcaagagaaaaatgggtgaa |
20284090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 27782576 - 27782480
Alignment:
| Q |
79 |
ctttggtatcaaaaatctagagaaaagtgggtgaagttgggggatagaaataacaaaatttttcatacccaaactgtgatcagaagaaagagaaaca |
175 |
Q |
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||||||||||||||||| |||||||| |||||||| || || || | ||||| | | |||||||| ||||||| | |||||||| |||| ||||| |
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| T |
27782576 |
ctttggtatcaaaaatccagagaaaattgggtgaaatttggagacaaaaatagctcattttttcatgcccaaacaatcatcagaaggaagaaaaaca |
27782480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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