View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1552_low_6 (Length: 355)
Name: NF1552_low_6
Description: NF1552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1552_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 9 - 339
Target Start/End: Original strand, 30093625 - 30093954
Alignment:
| Q |
9 |
catcatcattttccttactttttcaaaggaaacataaaaagtacaccttaatgtttgcatactttatacagaaaagaagtaggaggtagttacaattgtt |
108 |
Q |
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| T |
30093625 |
catcatcattttccttactttttcaaaggaaacataaaaagtacaccttaatgtttgcatactttatacagaaaagaagtaggaggtagttacaattgtt |
30093724 |
T |
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| Q |
109 |
ttactttacagattacatacaagtgtaacatttctacaaaaacaatataataatcaaatttcggaaagtaataagcaatattttgctattgctaatgtga |
208 |
Q |
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| T |
30093725 |
ttactttacagattacatacaagtgtaacatttctacaaaaacaatataataatcaaatttcggaaagtaataagcaatattttgctattgctaatgtga |
30093824 |
T |
|
| Q |
209 |
tccaaaaatgtagtttggggaatccatctaaccattttaacactttacaatagaaaacttcccacacaggtcaatcagcttcaattagtggaaacaatca |
308 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30093825 |
tccaaaaatgtagttt-gtgaatccatctaaccattttaacactttacaatagaaaacttcccacacaggtcaatcagcttcaattagcggaaacaatca |
30093923 |
T |
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| Q |
309 |
ttgaccaaactttacttgcccgactggattc |
339 |
Q |
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|||||||||||||||||||| |||||||||| |
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| T |
30093924 |
ttgaccaaactttacttgcctgactggattc |
30093954 |
T |
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