View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1552_low_7 (Length: 261)

Name: NF1552_low_7
Description: NF1552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1552_low_7
NF1552_low_7
[»] chr6 (26 HSPs)
chr6 (71-257)||(26066494-26066680)
chr6 (71-257)||(33310885-33311071)
chr6 (71-186)||(26068765-26068880)
chr6 (71-191)||(33308682-33308802)
chr6 (71-186)||(29755162-29755277)
chr6 (71-186)||(14507597-14507714)
chr6 (71-186)||(8995257-8995372)
chr6 (71-186)||(9019704-9019819)
chr6 (140-223)||(13883093-13883176)
chr6 (140-223)||(31249195-31249278)
chr6 (140-223)||(35201807-35201890)
chr6 (71-186)||(19227831-19227946)
chr6 (166-221)||(35209068-35209123)
chr6 (71-184)||(11983451-11983562)
chr6 (165-223)||(30729323-30729381)
chr6 (165-223)||(15533197-15533255)
chr6 (179-223)||(22344783-22344827)
chr6 (142-186)||(4816739-4816784)
chr6 (113-186)||(15530585-15530659)
chr6 (106-186)||(1072312-1072393)
chr6 (60-186)||(32279796-32279921)
chr6 (140-186)||(1230719-1230765)
chr6 (140-186)||(17695334-17695380)
chr6 (140-186)||(26064758-26064804)
chr6 (140-186)||(26084727-26084773)
chr6 (140-186)||(28241812-28241858)
[»] chr4 (38 HSPs)
chr4 (71-257)||(16932243-16932429)
chr4 (71-257)||(9174568-9174753)
chr4 (71-257)||(22780835-22781018)
chr4 (71-257)||(11006663-11006850)
chr4 (71-244)||(36920009-36920181)
chr4 (71-240)||(22044811-22044982)
chr4 (63-186)||(7941135-7941259)
chr4 (71-186)||(9176918-9177033)
chr4 (71-186)||(16934597-16934712)
chr4 (62-186)||(11434771-11434896)
chr4 (71-191)||(51015037-51015157)
chr4 (71-186)||(22783200-22783315)
chr4 (71-184)||(37089796-37089910)
chr4 (71-223)||(3824995-3825147)
chr4 (71-186)||(5637890-5638004)
chr4 (71-184)||(24888594-24888707)
chr4 (140-223)||(15316595-15316678)
chr4 (104-211)||(22048491-22048598)
chr4 (66-244)||(22801257-22801419)
chr4 (140-221)||(4884498-4884579)
chr4 (163-223)||(24880223-24880283)
chr4 (71-186)||(36921917-36922031)
chr4 (165-223)||(4569688-4569746)
chr4 (71-188)||(22803155-22803272)
chr4 (71-186)||(38408995-38409110)
chr4 (163-220)||(16638517-16638574)
chr4 (71-186)||(31850021-31850136)
chr4 (71-131)||(11009014-11009075)
chr4 (71-186)||(18846925-18847042)
chr4 (140-186)||(8528920-8528966)
chr4 (106-186)||(48486115-48486196)
chr4 (15-45)||(11006585-11006615)
chr4 (15-45)||(11008936-11008966)
chr4 (141-186)||(6764656-6764701)
chr4 (141-186)||(47868197-47868242)
chr4 (140-184)||(8631914-8631958)
chr4 (189-217)||(47747342-47747370)
chr4 (124-183)||(52942943-52943002)
[»] chr8 (25 HSPs)
chr8 (71-257)||(43081653-43081839)
chr8 (71-244)||(18812612-18812785)
chr8 (71-186)||(43079349-43079464)
chr8 (71-244)||(27829037-27829210)
chr8 (71-186)||(18810485-18810600)
chr8 (71-223)||(15072471-15072623)
chr8 (62-167)||(3886313-3886419)
chr8 (62-186)||(4423837-4423961)
chr8 (71-186)||(12517448-12517563)
chr8 (71-186)||(27826784-27826899)
chr8 (140-223)||(4812970-4813053)
chr8 (140-221)||(25684263-25684344)
chr8 (140-223)||(28332249-28332332)
chr8 (140-222)||(3275918-3276000)
chr8 (71-184)||(14807552-14807665)
chr8 (166-221)||(590433-590488)
chr8 (71-191)||(44720614-44720735)
chr8 (166-221)||(16753030-16753085)
chr8 (71-184)||(28252009-28252122)
chr8 (169-220)||(28895121-28895172)
chr8 (13-45)||(18812832-18812864)
chr8 (13-44)||(18810648-18810679)
chr8 (140-186)||(9021590-9021636)
chr8 (15-45)||(44720782-44720812)
chr8 (71-186)||(15067779-15067894)
[»] chr5 (38 HSPs)
chr5 (71-257)||(34477515-34477701)
chr5 (71-257)||(31544729-31544915)
chr5 (71-257)||(10756891-10757077)
chr5 (71-257)||(15354948-15355134)
chr5 (71-257)||(23667040-23667226)
chr5 (13-186)||(34479797-34479970)
chr5 (62-186)||(2174682-2174806)
chr5 (62-223)||(659678-659838)
chr5 (64-186)||(25921867-25921990)
chr5 (71-186)||(31542444-31542559)
chr5 (58-186)||(38960474-38960602)
chr5 (62-186)||(39797851-39797975)
chr5 (71-186)||(10749507-10749622)
chr5 (71-186)||(15357224-15357339)
chr5 (140-240)||(6746992-6747092)
chr5 (62-223)||(31466370-31466531)
chr5 (106-223)||(20504369-20504487)
chr5 (71-186)||(38881847-38881962)
chr5 (71-186)||(23664836-23664951)
chr5 (71-186)||(23793636-23793751)
chr5 (71-184)||(4236374-4236487)
chr5 (140-223)||(40222379-40222462)
chr5 (124-186)||(21684905-21684967)
chr5 (71-131)||(31179837-31179897)
chr5 (140-223)||(25452111-25452194)
chr5 (106-186)||(18186504-18186585)
chr5 (140-186)||(31179885-31179931)
chr5 (106-186)||(21947772-21947853)
chr5 (71-186)||(16775899-16776014)
chr5 (62-186)||(12556315-12556439)
chr5 (106-186)||(36402762-36402843)
chr5 (106-186)||(20507918-20507999)
chr5 (13-45)||(34477436-34477468)
chr5 (106-186)||(2818763-2818845)
chr5 (129-186)||(661227-661284)
chr5 (140-186)||(1240080-1240126)
chr5 (16-45)||(31542607-31542636)
chr5 (142-186)||(10529592-10529636)
[»] chr3 (47 HSPs)
chr3 (71-257)||(6063889-6064075)
chr3 (103-244)||(7606878-7607019)
chr3 (71-244)||(5899401-5899576)
chr3 (60-244)||(11170089-11170273)
chr3 (71-244)||(18097305-18097478)
chr3 (71-186)||(38210069-38210184)
chr3 (71-186)||(50493678-50493793)
chr3 (62-186)||(35777165-35777289)
chr3 (60-186)||(38889759-38889886)
chr3 (71-186)||(53896637-53896752)
chr3 (71-244)||(10956447-10956619)
chr3 (71-186)||(22114725-22114840)
chr3 (141-244)||(4308771-4308874)
chr3 (60-200)||(11162879-11163019)
chr3 (143-244)||(43227976-43228077)
chr3 (140-244)||(35918438-35918542)
chr3 (71-184)||(10192413-10192525)
chr3 (71-186)||(18099590-18099705)
chr3 (15-130)||(6066139-6066254)
chr3 (71-184)||(10085493-10085605)
chr3 (71-186)||(5885985-5886101)
chr3 (71-186)||(5191375-5191490)
chr3 (60-186)||(6719521-6719649)
chr3 (140-223)||(47878633-47878716)
chr3 (140-221)||(10595493-10595574)
chr3 (140-221)||(54192864-54192945)
chr3 (71-131)||(25388654-25388714)
chr3 (140-223)||(16461818-16461901)
chr3 (166-223)||(10094576-10094633)
chr3 (140-221)||(10901365-10901446)
chr3 (166-223)||(10201462-10201519)
chr3 (140-186)||(25388620-25388666)
chr3 (140-186)||(3859319-3859365)
chr3 (71-186)||(32264463-32264578)
chr3 (189-257)||(457882-457950)
chr3 (71-186)||(26720270-26720385)
chr3 (153-186)||(6066256-6066289)
chr3 (62-101)||(18162492-18162531)
chr3 (124-186)||(32218838-32218900)
chr3 (124-186)||(48362122-48362184)
chr3 (140-186)||(5858199-5858245)
chr3 (15-45)||(6063812-6063842)
chr3 (140-186)||(27101749-27101795)
chr3 (15-45)||(35777306-35777336)
chr3 (15-45)||(38889902-38889932)
chr3 (140-186)||(43225829-43225875)
chr3 (140-186)||(51727495-51727541)
[»] chr1 (26 HSPs)
chr1 (71-257)||(47179359-47179545)
chr1 (71-244)||(51752048-51752222)
chr1 (71-244)||(20302142-20302316)
chr1 (60-186)||(6822777-6822904)
chr1 (71-244)||(28842177-28842350)
chr1 (71-184)||(16225891-16226004)
chr1 (15-161)||(16231368-16231514)
chr1 (71-186)||(13761579-13761694)
chr1 (71-186)||(47177080-47177194)
chr1 (157-257)||(16228167-16228267)
chr1 (71-186)||(51749780-51749896)
chr1 (71-186)||(23783240-23783355)
chr1 (83-186)||(20291282-20291386)
chr1 (139-223)||(14098461-14098545)
chr1 (140-223)||(2393764-2393847)
chr1 (71-168)||(6823643-6823741)
chr1 (71-182)||(28840424-28840535)
chr1 (140-223)||(9526082-9526165)
chr1 (71-186)||(10400252-10400367)
chr1 (71-186)||(15823288-15823403)
chr1 (167-223)||(28201926-28201982)
chr1 (64-186)||(49687303-49687425)
chr1 (106-188)||(38925915-38925998)
chr1 (121-183)||(3580092-3580154)
chr1 (140-186)||(2617282-2617328)
chr1 (106-186)||(47451407-47451488)
[»] chr7 (26 HSPs)
chr7 (71-244)||(1047386-1047559)
chr7 (71-257)||(22136809-22136995)
chr7 (71-257)||(40551836-40552022)
chr7 (62-186)||(40837135-40837259)
chr7 (71-186)||(2935072-2935187)
chr7 (71-186)||(9027570-9027685)
chr7 (71-186)||(22107869-22107984)
chr7 (71-186)||(40549629-40549744)
chr7 (62-186)||(26804347-26804471)
chr7 (142-244)||(44258-44360)
chr7 (71-186)||(3878324-3878439)
chr7 (140-221)||(30246609-30246690)
chr7 (140-223)||(7074405-7074488)
chr7 (140-223)||(25405011-25405094)
chr7 (140-221)||(25409770-25409851)
chr7 (60-186)||(1049685-1049811)
chr7 (140-223)||(3320531-3320615)
chr7 (189-257)||(7349867-7349935)
chr7 (71-186)||(27306651-27306765)
chr7 (189-257)||(31156500-31156568)
chr7 (71-186)||(35381-35496)
chr7 (71-186)||(25542283-25542397)
chr7 (189-240)||(7092768-7092819)
chr7 (140-194)||(7464981-7465035)
chr7 (141-189)||(40946073-40946121)
chr7 (142-186)||(48457443-48457487)
[»] chr2 (24 HSPs)
chr2 (71-257)||(36559241-36559427)
chr2 (71-244)||(19502433-19502606)
chr2 (71-182)||(19504767-19504878)
chr2 (71-184)||(27104519-27104632)
chr2 (71-186)||(24162634-24162750)
chr2 (71-186)||(36561560-36561675)
chr2 (71-186)||(45332558-45332673)
chr2 (71-223)||(6259237-6259389)
chr2 (62-182)||(43623959-43624079)
chr2 (140-223)||(20050506-20050589)
chr2 (140-223)||(22712978-22713061)
chr2 (140-223)||(30478631-30478714)
chr2 (140-221)||(17943177-17943258)
chr2 (140-223)||(2740559-2740642)
chr2 (140-223)||(39686601-39686684)
chr2 (163-221)||(28462819-28462877)
chr2 (71-191)||(21521117-21521237)
chr2 (165-223)||(30262268-30262326)
chr2 (189-257)||(35216184-35216252)
chr2 (106-186)||(40032503-40032584)
chr2 (68-183)||(6264543-6264658)
chr2 (182-223)||(21518938-21518978)
chr2 (65-101)||(18800696-18800732)
chr2 (142-186)||(45280457-45280501)
[»] scaffold0140 (2 HSPs)
scaffold0140 (71-257)||(24121-24307)
scaffold0140 (71-186)||(21917-22032)
[»] scaffold0127 (1 HSPs)
scaffold0127 (71-186)||(12937-13052)
[»] scaffold0025 (2 HSPs)
scaffold0025 (71-243)||(69716-69888)
scaffold0025 (62-184)||(73418-73540)
[»] scaffold0250 (1 HSPs)
scaffold0250 (71-244)||(2573-2746)
[»] scaffold0472 (1 HSPs)
scaffold0472 (71-186)||(5929-6044)
[»] scaffold1764 (1 HSPs)
scaffold1764 (140-223)||(1073-1156)
[»] scaffold0068 (1 HSPs)
scaffold0068 (124-186)||(28943-29005)
[»] scaffold0131 (1 HSPs)
scaffold0131 (71-186)||(14769-14885)
[»] scaffold1674 (1 HSPs)
scaffold1674 (189-239)||(95-145)
[»] scaffold0038 (1 HSPs)
scaffold0038 (140-186)||(41974-42020)
[»] scaffold0552 (1 HSPs)
scaffold0552 (141-186)||(1302-1347)


Alignment Details
Target: chr6 (Bit Score: 159; Significance: 9e-85; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 71 - 257
Target Start/End: Original strand, 26066494 - 26066680
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||    
T  26066494 ccatcgtgccacgatttttccagtgccttgcccaaataactaaaacctccatcgtgccacgttgccttgccgtcgtgccacgattctacagaaacctgat 26066593  T
Q  171 tttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgct 257  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  26066594 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgctcaaacccttgct 26066680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 71 - 257
Target Start/End: Complemental strand, 33311071 - 33310885
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||  ||| ||||||||||||||||||||||||||||    
T  33311071 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgaagcccagccgtcgtgccacgattctgcagaaacctgat 33310972  T
Q  171 tttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgct 257  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  33310971 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgctcaaacccttgct 33310885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 26068765 - 26068880
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||    
T  26068765 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcatgccacgttgccttgccgtcgtgccacgattctgcagaaacctgat 26068864  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  26068865 tttaagttaactctca 26068880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 71 - 191
Target Start/End: Complemental strand, 33308802 - 33308682
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||  ||| ||||||||||||||||||||||||||||    
T  33308802 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgaagcccagccgtcgtgccacgattctgcagaaacctgat 33308703  T
Q  171 tttaagttaactctcataatt 191  Q
    |||||||||||||||| ||||    
T  33308702 tttaagttaactctcacaatt 33308682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 29755162 - 29755277
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||  |||  ||| ||||||||||||| ||||||||||||||    
T  29755162 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctgat 29755261  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  29755262 tttaagttaactctca 29755277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 14507597 - 14507714
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgc--ccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctg 168  Q
    |||||||||||| |||||||||||||||||   | |||||||| |||||||||| |||||||||||||  |||||||||||||||||||||||||| |||    
T  14507597 ccatcgtgccaccatttttccagtgccttgtatcaaaaaaactgaaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaatctg 14507696  T
Q  169 attttaagttaactctca 186  Q
    ||||||||||||||||||    
T  14507697 attttaagttaactctca 14507714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 8995372 - 8995257
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-attgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctg 168  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||| || |||||||||||||  ||||||||||||||||| || ||| | ||||    
T  8995372 ccatcgtgccacgatttttccagtgccttgccca-aaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattcctacag-atcctg 8995275  T
Q  169 attttaagttaactctca 186  Q
    ||||||||||||||||||    
T  8995274 attttaagttaactctca 8995257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 9019819 - 9019704
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-attgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctg 168  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||| || |||||||||||||  ||||||||||||||||| || ||| | ||||    
T  9019819 ccatcgtgccacgatttttccagtgccttgccca-aaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattcctacag-atcctg 9019722  T
Q  169 attttaagttaactctca 186  Q
    ||||||||||||||||||    
T  9019721 attttaagttaactctca 9019704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 13883176 - 13883093
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||| |||||| || ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13883176 ccatcgtggcacgatactccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgcc 13883093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 31249195 - 31249278
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||| |||||| || ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31249195 ccatcgtggcacgatactccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgcc 31249278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 35201807 - 35201890
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||| |||||| || ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35201807 ccatcgtggcacgatactccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgcc 35201890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 19227831 - 19227946
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctga 169  Q
    ||||||||||||||||||||||||||||||||  ||||| | ||||||||||  ||||||||||||   |||||||||||||||| |||||| | | | |    
T  19227831 ccatcgtgccacgatttttccagtgccttgcctcaaaaattgaaacctccatcatgccacgttgcccaaccatcgtgccacgattcctgcag-atcttaa 19227929  T
Q  170 ttttaagttaactctca 186  Q
    |||||||||||||||||    
T  19227930 ttttaagttaactctca 19227946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 35209068 - 35209123
Alignment:
Q  166 ctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatg 221  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35209068 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 35209123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 11983451 - 11983562
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||| |  | || ||  || |||||||||| || ||| ||||||   ||||||| |||||||||||||||||||||||    
T  11983451 ccatcgtgccacgatttttccagtgcttacctcacaa--ctgaaacctccatcgtaccatgttgcccaaccatcgtaccacgattctgcagaaacctgat 11983548  T
Q  171 tttaagttaactct 184  Q
    ||||||||||||||    
T  11983549 tttaagttaactct 11983562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 30729323 - 30729381
Alignment:
Q  165 cctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30729323 cctgatattaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgcc 30729381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 15533197 - 15533255
Alignment:
Q  165 cctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  15533197 cctgattttaagttaactctcacaattctccaccatgacttcaaataagtgatgatgcc 15533255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 22344783 - 22344827
Alignment:
Q  179 aactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  22344783 aactctcacaattctccaccttgacttcaaatcagtgatgatgcc 22344827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 4816739 - 4816784
Alignment:
Q  142 atcgtgccacgattctgcagaaa-cctgattttaagttaactctca 186  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  4816739 atcgtgccacgattctgcagaaaacctgattttaagttaactctca 4816784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 15530585 - 15530659
Alignment:
Q  113 aaacctcca-ttgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctca 186  Q
    ||||||||| |||||||||||| ||  ||||||||||||||||| |||||| | ||||||||||||||||||||||    
T  15530585 aaacctccaattgtgccacgttacccagccatcgtgccacgattcctgcag-atcctgattttaagttaactctca 15530659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 1072312 - 1072393
Alignment:
Q  106 aaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctca 186  Q
    |||||| ||||||||| | |||||||||||||   ||||||| |||||||| |||||||| ||||||||||||||||||||||    
T  1072312 aaaacttaaacctccaatcgtgccacgttgcccaaccatcgtaccacgatttctgcagaa-cctgattttaagttaactctca 1072393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 32279921 - 32279796
Alignment:
Q  60 ccgccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-attgtgccacgttgccttgccatcgtgccacgatt-ct 157  Q
    ||||||||||||||||||||||||| |||||||| | |||| ||  | |||| |||| ||| || |||||||||||||   | |||||| |||| || ||    
T  32279921 ccgccagcgcaccatcgtgccacgacttttccagcgacttg-cctcagaactgaaacatccaatcgtgccacgttgcccaacaatcgtgtcacgtttcct 32279823  T
Q  158 gcagaaacctgattttaagttaactctca 186  Q
    ||||||  |||||||||||||||||||||    
T  32279822 gcagaa--ctgattttaagttaactctca 32279796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 1230719 - 1230765
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||    
T  1230719 ccatcgtggcacgattctccagaattctgattttaagttaactctca 1230765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 17695334 - 17695380
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||    
T  17695334 ccatcgtggcacgattctccagaattctgattttaagttaactctca 17695380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 26064804 - 26064758
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||    
T  26064804 ccatcgtggcacgattctccagaattctgattttaagttaactctca 26064758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 26084773 - 26084727
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||    
T  26084773 ccatcgtggcacgattctccagaattctgattttaagttaactctca 26084727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 28241812 - 28241858
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||    
T  28241812 ccatcgtggcacgattcttcagaattctgattttaagttaactctca 28241858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 71 - 257
Target Start/End: Original strand, 16932243 - 16932429
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||    
T  16932243 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctgat 16932342  T
Q  171 tttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgct 257  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  16932343 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgctcaaacccttgct 16932429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 71 - 257
Target Start/End: Original strand, 9174568 - 9174753
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    ||||||||||| |||||||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| ||||||||||||||||||||| ||||||    
T  9174568 ccatcgtgccatgatttttccagtgccttgcctaataaactaaaacctccatcgtgctacgttgcctagccgtcgtgccacgattctgcagaa-cctgat 9174666  T
Q  171 tttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgct 257  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||    
T  9174667 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgttgctcaaacccttgct 9174753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 71 - 257
Target Start/End: Original strand, 22780835 - 22781018
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||  || ||||| |||||||||||||||||||||||    
T  22780835 ccatcgtgccatgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagctatcgtaccacgattctgcagaaacctgat 22780934  T
Q  171 tttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgct 257  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||   ||||||||||||||||| |||||| |||||    
T  22780935 tttaagttaactctcacaattctccaccttgacttcaaattagtgatgatgccg---atcaacctccttgctgctcaaacccttgct 22781018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 71 - 257
Target Start/End: Original strand, 11006663 - 11006850
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaa-cctga 169  Q
    |||||||||||||||||||||||||||||||| |||||| | |||||||||| |||||||||||||  || ||||||||||||||||||| ||| |||||    
T  11006663 ccatcgtgccacgatttttccagtgccttgcctaaaaaattgaaacctccatcgtgccacgttgcccagcgatcgtgccacgattctgcataaaacctga 11006762  T
Q  170 ttttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgct 257  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||    
T  11006763 ttttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgtcgatcatcaacctccttgctgctcaaacccttgct 11006850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 71 - 244
Target Start/End: Original strand, 36920009 - 36920181
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattctgcagaaacctga 169  Q
    ||||||||||||||||||||||||| ||||||  ||||  | ||||||||| | |||||||||||||  ||||||||||||||||| ||||||| |||||    
T  36920009 ccatcgtgccacgatttttccagtgacttgcctcaaaat-tgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattttgcagaa-cctga 36920106  T
Q  170 ttttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgc 244  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||| |||||||||    
T  36920107 ttttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccaattatcaaccaccttgctgc 36920181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 22044811 - 22044982
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgccc--aaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattc-tgcagaaacct 167  Q
    ||||||||||||||||||||||||||||||||   |||||| | |||||||||| ||||||||||||| | | ||||||||||||||| ||||||  | |    
T  22044811 ccatcgtgccacgatttttccagtgccttgcctcaaaaaaaatgaaacctccatcgtgccacgttgcccttcaatcgtgccacgattcctgcagat-ctt 22044909  T
Q  168 gattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttg 240  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  22044910 gattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccaatcatcaaccaccttg 22044982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 63 - 186
Target Start/End: Complemental strand, 7941259 - 7941135
Alignment:
Q  63 ccagcgcaccatcgtgccacgatttttccagtgccttgcc-caaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcag 161  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||| |||||||||||||  |||||||||||||||||||||||    
T  7941259 ccagcgcaccatcgtgccaccatttttccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcag 7941160  T
Q  162 aaacctgattttaagttaactctca 186  Q
    |||||||||||||||||||||||||    
T  7941159 aaacctgattttaagttaactctca 7941135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 9176918 - 9177033
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||  || ||||||||||||||||||||||||||||    
T  9176918 ccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctccatcgtgccacgttgcctaaccgtcgtgccacgattctgcagaaacctgat 9177017  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  9177018 tttaagttaactctca 9177033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 16934597 - 16934712
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||  ||| ||||||||||||||||||||||||||||    
T  16934597 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccatgttgcccagccgtcgtgccacgattctgcagaaacctgat 16934696  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  16934697 tttaagttaactctca 16934712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 62 - 186
Target Start/End: Complemental strand, 11434896 - 11434771
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttccagtgccttgcc-caaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgca 160  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| |||||||||||||  |||||||| |||||||||||||    
T  11434896 gccagcgcaccatcgtgccacgatttttccagtgtcttgcctcaaaaaactgaaacctccatcgtgccacgttgcccagccatcgtaccacgattctgca 11434797  T
Q  161 gaaacctgattttaagttaactctca 186  Q
    ||||||||||||||||||||||||||    
T  11434796 gaaacctgattttaagttaactctca 11434771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 71 - 191
Target Start/End: Complemental strand, 51015157 - 51015037
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||| ||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||    
T  51015157 ccatcgtgccacaatttttccagtgccttgcctaaaaaactgaaacctccatcgtgccacgttgccttgccatcatgccacgattctgcagaaatctgat 51015058  T
Q  171 tttaagttaactctcataatt 191  Q
    |||||||||||||||| ||||    
T  51015057 tttaagttaactctcagaatt 51015037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 22783200 - 22783315
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||  || ||||| |||||||||||||||||||||||    
T  22783200 ccatcgtgccatgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagctatcgtaccacgattctgcagaaacctgat 22783299  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  22783300 tttaagttaactctca 22783315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 37089796 - 37089910
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctc-cattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctga 169  Q
    ||||||||||||||||||||||||||||  || ||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  37089796 ccatcgtgccacgatttttccagtgcctcacctaaaaaactaaaacatctcatcgtgccacgttgccttgccatcgtgccacgattctgcagaaatctga 37089895  T
Q  170 ttttaagttaactct 184  Q
    |||||||||||||||    
T  37089896 ttttaagttaactct 37089910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 71 - 223
Target Start/End: Original strand, 3824995 - 3825147
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattctgcagaaacctga 169  Q
    |||| |||||| |||||||||||||| |||||  |||| || ||||||||| | |||||| ||||||  ||||||||| |||||||||||||||||||||    
T  3824995 ccattgtgccatgatttttccagtgctttgcctcaaaa-ctgaaacctccaatcgtgccatgttgcccagccatcgtgtcacgattctgcagaaacctga 3825093  T
Q  170 ttttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    ||||||||||||||||| |||| || ||||||||||||||||||||||||||||    
T  3825094 ttttaagttaactctcacaattgtcaaccttgacttcaaatcagtgatgatgcc 3825147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 5637890 - 5638004
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||| || ||||||||||||||||||||  |||| || |||||||||| |||||||||||||  || ||||||||||||||| |||||||||||||    
T  5637890 ccatcgtgacatgatttttccagtgccttgcctcaaaa-ctgaaacctccatcgtgccacgttgcccagcaatcgtgccacgattccgcagaaacctgat 5637988  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  5637989 tttaagttaactctca 5638004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 24888707 - 24888594
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattctgcagaaacctga 169  Q
    |||||||||||||||||||||||||| |||||  |||   | ||||||||| | |||||||||||||| ||||||||||||| |||||||||||| ||||    
T  24888707 ccatcgtgccacgatttttccagtgctttgcctcaaact-tgaaacctccaatcgtgccacgttgcctagccatcgtgccacaattctgcagaaatctga 24888609  T
Q  170 ttttaagttaactct 184  Q
    |||||||||||||||    
T  24888608 ttttaagttaactct 24888594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 15316678 - 15316595
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||| ||||||||| ||||   ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  15316678 ccatcgtggcacgattctccagatttctgattttaagttaactctcacaattcttcaccttgacttcaaatcagtgatgatgcc 15316595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 22048491 - 22048598
Alignment:
Q  104 aaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgac 203  Q
    |||||||| |||||||||| ||||||||||||| | | ||||||||||||||||   | | | |||||||||||||||||||| ||||||||| ||||||    
T  22048491 aaaaaactgaaacctccatcgtgccacgttgcccttcaatcgtgccacgattcttgcggatcttgattttaagttaactctcacaattctccaacttgac 22048590  T
Q  204 ttcaaatc 211  Q
    ||||||||    
T  22048591 ttcaaatc 22048598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 244
Target Start/End: Original strand, 22801257 - 22801419
Alignment:
Q  66 gcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattctgcagaaa 164  Q
    ||||||||||||||||||||||||||||| |||||||  |||| || ||||||||| | ||| |||||||||   ||||||||||||||||||| |||||    
T  22801257 gcgcaccatcgtgccacgatttttccagttccttgcctcaaaa-ctgaaacctccaatcgtgtcacgttgcccaaccatcgtgccacgattctgtagaaa 22801355  T
Q  165 cctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgc 244  Q
    |                ||||| ||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  22801356 c----------------tctcacaattctctaccttgacttcaaatcagtgaagatgccaatcatcaacctccttgctgc 22801419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 4884579 - 4884498
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatg 221  Q
    |||||||| ||||||||| ||||   ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  4884579 ccatcgtggcacgattctccagatttctgattttaagttaactctcacaattctccacattgacttcaaatcagtgatgatg 4884498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 24880283 - 24880223
Alignment:
Q  163 aacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  24880283 aacctgattttaagttaactttcacaattctccaccttgacttcaaatcagtgatgatgcc 24880223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 36921917 - 36922031
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-attgtgccacgttgccttgccatcgtgccacgattctgcagaaacctga 169  Q
    ||||||||||||||||||||||||| |||| ||  |||||| |||||||| || |||||| ||||||  |||||||| |||||||| ||||| |||||||    
T  36921917 ccatcgtgccacgatttttccagtgacttg-cctcaaaactgaaacctccaatcgtgccatgttgcccagccatcgtaccacgattttgcag-aacctga 36922014  T
Q  170 ttttaagttaactctca 186  Q
    |||||||||||||||||    
T  36922015 ttttaagttaactctca 36922031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 4569746 - 4569688
Alignment:
Q  165 cctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  4569746 cctgattttaagttaactctcacaattctccaccttgacttcaaattagtgatgatgcc 4569688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 188
Target Start/End: Original strand, 22803155 - 22803272
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattctgcagaaacctga 169  Q
    |||||| |||||||||||||||||||||| ||  |||| || ||||||||| | |||||||||||||  |||||||| ||||||||||  |||||  |||    
T  22803155 ccatcgagccacgatttttccagtgcctttcctcaaaa-ctgaaacctccaatcgtgccacgttgcccagccatcgtaccacgattctatagaaatttga 22803253  T
Q  170 ttttaagttaactctcata 188  Q
    |||||||||||||||||||    
T  22803254 ttttaagttaactctcata 22803272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 38409110 - 38408995
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattctgcagaaacctga 169  Q
    |||||||||||||||||||||||||| |||||  |||   | ||||||||| | |||||||| ||||  || ||||||||||||||||||||||| || |    
T  38409110 ccatcgtgccacgatttttccagtgctttgcctcaaact-tgaaacctccaatcgtgccacgatgcccagcaatcgtgccacgattctgcagaaatctaa 38409012  T
Q  170 ttttaagttaactctca 186  Q
    |||||||||||||||||    
T  38409011 ttttaagttaactctca 38408995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 16638574 - 16638517
Alignment:
Q  163 aacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgat 220  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||    
T  16638574 aacctgattttatgttaactctcacaattctccaccttgacttcaaatgagtgatgat 16638517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 31850021 - 31850136
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-attgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctg 168  Q
    ||||||||||| |||||||||||||||||||||  |||||| |||||||| || |||||||||||||  || |||||||||| ||| |||||| | | ||    
T  31850021 ccatcgtgccaagatttttccagtgccttgccc-caaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacaattcctgcag-atcttg 31850118  T
Q  169 attttaagttaactctca 186  Q
    ||||||||||||||||||    
T  31850119 attttaagttaactctca 31850136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 11009014 - 11009075
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcc-caaaaaactaaaacctccattgtgccacg 131  Q
    ||||||||||||||||||||||||||||||||  |||||| | |||||||||||||||||||    
T  11009014 ccatcgtgccacgatttttccagtgccttgcctaaaaaaattgaaacctccattgtgccacg 11009075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 18847042 - 18846925
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattctgcag--aaacct 167  Q
    ||||||| |||||||||||||||| |||||||  |||| || ||||||||| | |||||||| | ||   | ||||||||||||||||||||  ||| ||    
T  18847042 ccatcgtaccacgatttttccagtaccttgcctcaaaa-ctgaaacctccaatcgtgccacgattcccaacaatcgtgccacgattctgcagaaaaatct 18846944  T
Q  168 gattttaagttaactctca 186  Q
    |||||||||||||||||||    
T  18846943 gattttaagttaactctca 18846925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 8528966 - 8528920
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||||| ||||||||| |||||| |||||||||||||||||||||    
T  8528966 ccatcgtgacacgattctccagaaatctgattttaagttaactctca 8528920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 48486196 - 48486115
Alignment:
Q  106 aaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctca 186  Q
    |||||| ||||||||| | ||||||||||||   ||||||||||||||||| |||||| | ||||||||||||||||||||||    
T  48486196 aaaactgaaacctccaatcgtgccacgttgctcagccatcgtgccacgatttctgcagga-cctgattttaagttaactctca 48486115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 11006585 - 11006615
Alignment:
Q  15 aaaatctgtaacaaatctgcacccaaaaata 45  Q
    |||||||||||||||||||||||||||||||    
T  11006585 aaaatctgtaacaaatctgcacccaaaaata 11006615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 11008936 - 11008966
Alignment:
Q  15 aaaatctgtaacaaatctgcacccaaaaata 45  Q
    |||||||||||||||||||||||||||||||    
T  11008936 aaaatctgtaacaaatctgcacccaaaaata 11008966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 6764701 - 6764656
Alignment:
Q  141 catcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    ||||||| ||||||||| |||||  |||||||||||||||||||||    
T  6764701 catcgtggcacgattctccagaattctgattttaagttaactctca 6764656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 47868242 - 47868197
Alignment:
Q  141 catcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    ||||||| ||||||||| |||||  |||||||||||||||||||||    
T  47868242 catcgtggcacgattctccagaattctgattttaagttaactctca 47868197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 8631914 - 8631958
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactct 184  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||    
T  8631914 ccatcgtggcacgattctccagaattctgattttaagttaactct 8631958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 217
Target Start/End: Complemental strand, 47747370 - 47747342
Alignment:
Q  189 attctccaccttgacttcaaatcagtgat 217  Q
    |||||||||||||||||||||||||||||    
T  47747370 attctccaccttgacttcaaatcagtgat 47747342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 52942943 - 52943002
Alignment:
Q  124 gtgccacgttgccttgccatcgtgccacgattct-gcagaaacctgattttaagttaactc 183  Q
    |||||||||||||   |||||||||||||||| | ||| ||||||||||||||||||||||    
T  52942943 gtgccacgttgcccaaccatcgtgccacgatttttgca-aaacctgattttaagttaactc 52943002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 71 - 257
Target Start/End: Complemental strand, 43081839 - 43081653
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||    
T  43081839 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccactttgccttgccgtcgtgccacgattctgcagaaacctgat 43081740  T
Q  171 tttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgct 257  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||| |||||    
T  43081739 tttaagttaactctcacaattctccaccttgacttcaaatcaatgatgatgccgatcatcaacctcctttctgctcaaacccttgct 43081653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 71 - 244
Target Start/End: Complemental strand, 18812785 - 18812612
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||  ||| ||||||||||||||| ||||||||||||    
T  18812785 ccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctccatcgtgccacgttgcccagccgtcgtgccacgattcttcagaaacctgat 18812686  T
Q  171 tttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgc 244  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18812685 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccaatcatcaacctccttgctgc 18812612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 43079464 - 43079349
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  43079464 ccatcgtaccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgccttgccgtcgtgccacgattctgcagaaacctgat 43079365  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  43079364 tttaagttaactctca 43079349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 71 - 244
Target Start/End: Complemental strand, 27829210 - 27829037
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattc-tgcagaaacctga 169  Q
    |||||||||||||||||||||||||  |||||  ||||| | |||||||||| |||||||||||||  || ||||||||||||||| ||||||  |||||    
T  27829210 ccatcgtgccacgatttttccagtgttttgcctcaaaaaatgaaacctccatcgtgccacgttgcccagcaatcgtgccacgattcctgcagat-cctga 27829112  T
Q  170 ttttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgc 244  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  27829111 ttttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccaatcatcaacatccttgctgc 27829037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 18810600 - 18810485
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||| | ||||||||||||||||||| |||||| |||||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||    
T  18810600 ccatcgtgccgcaatttttccagtgccttgcctaaaaaaataaaacctccatcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctgat 18810501  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  18810500 tttaagttaactctca 18810485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 71 - 223
Target Start/End: Complemental strand, 15072623 - 15072471
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattc-tgcagaaacctg 168  Q
    |||||||| ||||||||||| |||| |||||   |||| || ||||||||| | ||| |||||||||  ||||||||| |||||||| ||||||| | ||    
T  15072623 ccatcgtgacacgatttttctagtggcttgcttcaaaa-ctgaaacctccaatcgtgtcacgttgcccagccatcgtgtcacgattcctgcagaatc-tg 15072526  T
Q  169 attttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15072525 attttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgcc 15072471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 62 - 167
Target Start/End: Original strand, 3886313 - 3886419
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttccagtgccttgcc-caaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgca 160  Q
    |||||| ||||||||| ||||||||||||||||| |||||| ||||||||| |||||||||| ||||||||||| |  |||||| || ||||||||||||    
T  3886313 gccagcacaccatcgtaccacgatttttccagtgtcttgcctcaaaaaactgaaacctccatcgtgccacgttgtccagccatcatgtcacgattctgca 3886412  T
Q  161 gaaacct 167  Q
    |||||||    
T  3886413 gaaacct 3886419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 62 - 186
Target Start/End: Complemental strand, 4423961 - 4423837
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-attgtgccacgttgccttgccatcgtgccacgatt-ctgc 159  Q
    ||||||||||||||||||||||||||||||||||||||| ||  |||||| |||||||| ||||||||||||||||  || || ||||||||||| ||||    
T  4423961 gccagcgcaccatcgtgccacgatttttccagtgccttg-ccttaaaactgaaacctccaattgtgccacgttgcccagcaattgtgccacgattcctgc 4423863  T
Q  160 agaaacctgattttaagttaactctca 186  Q
    || | | ||||||||||||||||||||    
T  4423862 ag-atcttgattttaagttaactctca 4423837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 12517448 - 12517563
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctg 168  Q
    |||||||||||||||||||||||| | |||||  |||| || ||||||||| | |||||||||||||||||||||||||||||||| |||||| | ||||    
T  12517448 ccatcgtgccacgatttttccagtacattgcctcaaaa-ctgaaacctccaatcgtgccacgttgccttgccatcgtgccacgattcctgcag-atcctg 12517545  T
Q  169 attttaagttaactctca 186  Q
    ||||||||||||||||||    
T  12517546 attttaagttaactctca 12517563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 27826899 - 27826784
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctga 169  Q
    |||||||||||||||||||||||||| ||||   ||||| | |||||||||| |||||||||||||  || |||||||||||||| |||||| | |||||    
T  27826899 ccatcgtgccacgatttttccagtgctttgcttcaaaaaatgaaacctccatcgtgccacgttgcccagcaatcgtgccacgattcctgcag-atcctga 27826801  T
Q  170 ttttaagttaactctca 186  Q
    |||||||||||||||||    
T  27826800 ttttaagttaactctca 27826784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 4812970 - 4813053
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||| |||||| || ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4812970 ccatcgtggcacgatactccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgcc 4813053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 25684344 - 25684263
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatg 221  Q
    |||||||| |||||| || ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25684344 ccatcgtggcacgatgctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 25684263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 28332332 - 28332249
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||| |||||| || ||||   ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  28332332 ccatcgtggcacgatgctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagcgatgatgcc 28332249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 3276000 - 3275918
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgc 222  Q
    |||||||| |||| |||| ||||   ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  3276000 ccatcgtggcacgtttctccagatttctgattttaagttaactctcgcaattctccaccttgacttcaaatcagtgatgatgc 3275918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 14807665 - 14807552
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattctgcagaaacctga 169  Q
    |||||||||||||||||||||||||| |||||  |||   | ||||||||| | ||| |||||||||   ||||| ||||||||||||||||||||||||    
T  14807665 ccatcgtgccacgatttttccagtgctttgcctcaaact-tgaaacctccaatcgtgtcacgttgcccaaccatcatgccacgattctgcagaaacctga 14807567  T
Q  170 ttttaagttaactct 184  Q
    |||||||||||||||    
T  14807566 ttttaagttaactct 14807552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 590488 - 590433
Alignment:
Q  166 ctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatg 221  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  590488 ctgattttaagttaactctcacaattcttcaccttgacttcaaatcagtgatgatg 590433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 191
Target Start/End: Complemental strand, 44720735 - 44720614
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattctgcagaaa-cctg 168  Q
    |||||||||||||||||||||||| |||||||  |||| || |||||||||   |||||||  ||||  || ||| ||||||||||||||||||| ||||    
T  44720735 ccatcgtgccacgatttttccagtaccttgcctcaaaa-ctgaaacctccaaacgtgccacaatgcccagcaatcatgccacgattctgcagaaaacctg 44720637  T
Q  169 attttaagttaactctcataatt 191  Q
    |||||||||||||||||| ||||    
T  44720636 attttaagttaactctcacaatt 44720614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 16753030 - 16753085
Alignment:
Q  166 ctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatg 221  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||    
T  16753030 ctgattttaagttaagtctcacaattctccaccttgacttcaaattagtgatgatg 16753085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 28252009 - 28252122
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctg 168  Q
    |||||||||||||||||||||||||| |||||  |||   | ||||||||| | || ||||||||||| ||||||||||||||||| |||||| | ||||    
T  28252009 ccatcgtgccacgatttttccagtgctttgcctcaaact-tgaaacctccaatcgtaccacgttgcctagccatcgtgccacgattcctgcag-atcctg 28252106  T
Q  169 attttaagttaactct 184  Q
    ||||||||||||||||    
T  28252107 attttaagttaactct 28252122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 28895172 - 28895121
Alignment:
Q  169 attttaagttaactctcataattctccaccttgacttcaaatcagtgatgat 220  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  28895172 attttaagttaagtctcacaattctccaccttgacttcaaatcagtgatgat 28895121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 18812864 - 18812832
Alignment:
Q  13 tcaaaatctgtaacaaatctgcacccaaaaata 45  Q
    |||||||||||||||||||||||||||||||||    
T  18812864 tcaaaatctgtaacaaatctgcacccaaaaata 18812832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 44
Target Start/End: Complemental strand, 18810679 - 18810648
Alignment:
Q  13 tcaaaatctgtaacaaatctgcacccaaaaat 44  Q
    ||||||||||||||||||||||||||||||||    
T  18810679 tcaaaatctgtaacaaatctgcacccaaaaat 18810648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 9021590 - 9021636
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||    
T  9021590 ccatcgtggcacgattctccagaattctgattttaagttaactctca 9021636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 44720812 - 44720782
Alignment:
Q  15 aaaatctgtaacaaatctgcacccaaaaata 45  Q
    |||||||||||||||||||||||||||||||    
T  44720812 aaaatctgtaacaaatctgcacccaaaaata 44720782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 15067894 - 15067779
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-attgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctg 168  Q
    |||||||| || ||||||||||||| |||| |   |||||| |||||||| || |||||| ||||||  |||||| |||||||||| ||||| ||| |||    
T  15067894 ccatcgtggcatgatttttccagtggcttg-cttcaaaactgaaacctccaatcgtgccatgttgcccagccatcttgccacgattcctgca-aaatctg 15067797  T
Q  169 attttaagttaactctca 186  Q
    ||||||||||||| ||||    
T  15067796 attttaagttaacactca 15067779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 71 - 257
Target Start/End: Original strand, 34477515 - 34477701
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||| ||||    
T  34477515 ccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaacttgat 34477614  T
Q  171 tttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgct 257  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  34477615 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgctcaaacccttgct 34477701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 71 - 257
Target Start/End: Complemental strand, 31544915 - 31544729
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  || |||||||||||||| ||||||||||||||    
T  31544915 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattttgcagaaacctgat 31544816  T
Q  171 tttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgct 257  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| |||||    
T  31544815 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccaatcatcaaccaccttgctgctcaaacccttgct 31544729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 71 - 257
Target Start/End: Complemental strand, 10757077 - 10756891
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||  |||  ||| |||||| |||||| ||||||||||||||    
T  10757077 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagccgtcgtgctacgattgtgcagaaacctgat 10756978  T
Q  171 tttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgct 257  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  10756977 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgctcaaacccttgct 10756891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 71 - 257
Target Start/End: Original strand, 15354948 - 15355134
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||  |||  ||  ||||||||||||| ||||||||||||||    
T  15354948 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgat 15355047  T
Q  171 tttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgct 257  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  15355048 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgctcaaacccttgct 15355134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 71 - 257
Target Start/End: Complemental strand, 23667226 - 23667040
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| |||||| ||||| ||  |||  ||  ||||||||||||| ||||||||||||||    
T  23667226 ccatcgtgccacgatttttccagtgcctttcccaaaaaaataaaaactccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgat 23667127  T
Q  171 tttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgct 257  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  23667126 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgctcaaacccttgct 23667040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 34479797 - 34479970
Alignment:
Q  13 tcaaaatctgtaacaaatctgcacccaaaaatannnnnnnnnnnnatccgccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaacta 112  Q
    |||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34479797 tcaaaatctgtaacaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatttttccagtgccttgcctaaaaaacta 34479896  T
Q  113 aaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34479897 aaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctca 34479970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 62 - 186
Target Start/End: Complemental strand, 2174806 - 2174682
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcag 161  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2174806 gccagtgcaccatcgtgccacgatttttccagtgccttgcctaaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcag 2174707  T
Q  162 aaacctgattttaagttaactctca 186  Q
    |||||||||||||||||||||||||    
T  2174706 aaacctgattttaagttaactctca 2174682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 62 - 223
Target Start/End: Complemental strand, 659838 - 659678
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgatt-ctgc 159  Q
    |||||||||||||||||||||||||||||||||| ||||||  |||  || ||||||||| | |||||||||||||| ||||||||||||||||| ||||    
T  659838 gccagcgcaccatcgtgccacgatttttccagtgacttgcctcaaa--ctgaaacctccaatcgtgccacgttgcctagccatcgtgccacgatttctgc 659741  T
Q  160 agaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  659740 agaa-cctgattttaagttaactctcacaattctccaccttgacttcaaatcagggatgatgcc 659678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 25921867 - 25921990
Alignment:
Q  64 cagcgcaccatcgtgccacgatttttccagtgccttgcc-caaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcaga 162  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| |   |||||||||||||||||||||||    
T  25921867 cagcgcaccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgtccaaccatcgtgccacgattctgcaga 25921966  T
Q  163 aacctgattttaagttaactctca 186  Q
    ||||||||||||||||||||||||    
T  25921967 aacctgattttaagttaactctca 25921990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 31542559 - 31542444
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  || |||||| ||||||| ||||||||||||||    
T  31542559 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagctatcgtgtcacgattttgcagaaacctgat 31542460  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  31542459 tttaagttaactctca 31542444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 58 - 186
Target Start/End: Original strand, 38960474 - 38960602
Alignment:
Q  58 atccgccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattct 157  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||  ||| ||||||||||||| |    
T  38960474 atccgccaacgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcaaagcccagccgtcgtgccacgattgt 38960573  T
Q  158 gcagaaacctgattttaagttaactctca 186  Q
    |||||||||||||||||||||||||||||    
T  38960574 gcagaaacctgattttaagttaactctca 38960602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 62 - 186
Target Start/End: Complemental strand, 39797975 - 39797851
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcag 161  Q
    |||||||||||||||||||| ||||||||| ||||||||||  ||||||| ||||||||||  ||||||||||||  ||||||||||||||||| |||||    
T  39797975 gccagcgcaccatcgtgccatgatttttccggtgccttgcctcaaaaactgaaacctccatcatgccacgttgcccagccatcgtgccacgattatgcag 39797876  T
Q  162 aaacctgattttaagttaactctca 186  Q
    |||||||||||||||||||||||||    
T  39797875 aaacctgattttaagttaactctca 39797851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 10749622 - 10749507
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||  |||  ||| ||||||||||||| ||||||||||||||    
T  10749622 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctgat 10749523  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  10749522 tttaagttaactctca 10749507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 15357224 - 15357339
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||  |||  ||  ||||||||||||| ||||||||||||||    
T  15357224 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgat 15357323  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  15357324 tttaagttaactctca 15357339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 6747092 - 6746992
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctcctt 239  Q
    |||||||| ||||||||| |||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6747092 ccatcgtggcacgattctccagaattctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccaatcatcaacctcctt 6746993  T
Q  240 g 240  Q
    |    
T  6746992 g 6746992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 62 - 223
Target Start/End: Original strand, 31466370 - 31466531
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctc-cattgtgccacgttgccttgccatcgtgccacgattc-tgc 159  Q
    ||||| |||||||||||||| ||||||||||||| ||||||  | || || |||| || ||| ||||||||||||| | | ||||||||||||||| |||    
T  31466370 gccagtgcaccatcgtgccaagatttttccagtgacttgcctcataa-ctgaaacatctcatcgtgccacgttgcccttcaatcgtgccacgattcctgc 31466468  T
Q  160 agaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    | ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  31466469 a-aaacctgattttaagttaactctcacaattctccacattgacttcaaatcagtgatgatgcc 31466531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 20504369 - 20504487
Alignment:
Q  106 aaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcataattctccaccttgac 203  Q
    |||||||||||||||| | |||||||||||||  || |||||||||||||| |||||||| |||||||||||||||||||||| |||||||||| |||||    
T  20504369 aaaactaaaacctccaatcgtgccacgttgcccagctatcgtgccacgatttctgcagaa-cctgattttaagttaactctcacaattctccacattgac 20504467  T
Q  204 ttcaaatcagtgatgatgcc 223  Q
    ||||||||||||||||||||    
T  20504468 ttcaaatcagtgatgatgcc 20504487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 38881962 - 38881847
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctga 169  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||  || |||||||||||||| |||||| | | |||    
T  38881962 ccatcgtgccacgatttttccagtgccttgcctcaaaaactaaaacctccatcgtgccacgttgcccagcaatcgtgccacgattcctgcag-atcttga 38881864  T
Q  170 ttttaagttaactctca 186  Q
    |||||||||||||||||    
T  38881863 ttttaagttaactctca 38881847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 23664951 - 23664836
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| |||||| ||||| ||  |||  ||  ||||||||||||| ||||||||||||||    
T  23664951 ccatcgtgccacgatttttccagtgcctttcccaaaaaaataaaaactccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgat 23664852  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  23664851 tttaagttaactctca 23664836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 23793636 - 23793751
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| |||||| ||||| ||  |||  ||  ||||||||||||| ||||||||||||||    
T  23793636 ccatcgtgccacgatttttccagtgcctttcccaaaaaaataaaaactccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgat 23793735  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  23793736 tttaagttaactctca 23793751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 4236487 - 4236374
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattctgcagaaacctga 169  Q
    |||| |||||||||||||||||||||||||||  |||| || ||||||||| | |||||||||||||  ||||||||||||| |||||||||||| ||||    
T  4236487 ccattgtgccacgatttttccagtgccttgccttaaaa-ctgaaacctccaatcgtgccacgttgcccagccatcgtgccacaattctgcagaaatctga 4236389  T
Q  170 ttttaagttaactct 184  Q
    |||||||||||||||    
T  4236388 ttttaagttaactct 4236374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 40222462 - 40222379
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||| ||||||||| ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40222462 ccatcgtggcacgattctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgcc 40222379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 21684905 - 21684967
Alignment:
Q  124 gtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21684905 gtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctca 21684967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 31179837 - 31179897
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacg 131  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  31179837 ccatcgtgccacgatttttccagtgtcttgcccaaaaaactaaaacctccatcgtgccacg 31179897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 25452194 - 25452111
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||| ||||||||| || |   || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25452194 ccatcgtggcacgattctccatatttctaattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgcc 25452111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 18186504 - 18186585
Alignment:
Q  106 aaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||| ||||||||| | |||||||||||||  |||||||| |||||||||||||||||| ||||||||||||||||||||    
T  18186504 aaaactgaaacctccaatcgtgccacgttgcccagccatcgtaccacgattctgcagaaacttgattttaagttaactctca 18186585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 31179885 - 31179931
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31179885 ccatcgtgccacgattctgcagaaacctgattttaagttaactctca 31179931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 21947853 - 21947772
Alignment:
Q  106 aaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctca 186  Q
    |||||| ||||||||| | ||| |||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  21947853 aaaactgaaacctccaatcgtgtcacgttgcctagccatcgtgccacgatttctgcagaa-cctgattttaagttaactctca 21947772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 16776014 - 16775899
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctg 168  Q
    ||||||||||||||||||| |||||| |||||  |||   | ||||||||| | ||| |||||||||||||||||||||||||||| |||||| | ||||    
T  16776014 ccatcgtgccacgattttttcagtgctttgcctcaaact-tgaaacctccaatcgtgtcacgttgccttgccatcgtgccacgattcctgcag-atcctg 16775917  T
Q  169 attttaagttaactctca 186  Q
    |||||||||||| |||||    
T  16775916 attttaagttaattctca 16775899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 186
Target Start/End: Original strand, 12556315 - 12556439
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcca-ttgtgccacgttgccttgccatcgtgccacgatt-ctgc 159  Q
    ||||||||| |||||||||||||    ||||||| ||||||  |||| || ||||||||| |||||||||||||||  |||||  |||||||||| ||||    
T  12556315 gccagcgcatcatcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaacctccaattgtgccacgttgcccagccattatgccacgatttctgc 12556413  T
Q  160 agaaacctgattttaagttaactctca 186  Q
    |||| ||||||||||| ||||||||||    
T  12556414 agaa-cctgattttaaattaactctca 12556439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 36402762 - 36402843
Alignment:
Q  106 aaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||| ||||||||| | |||| | ||||||  |||||||||||  |||||||||||||||| ||||||||||||||||||    
T  36402762 aaaactgaaacctccaatcgtgctatgttgcccagccatcgtgcctagattctgcagaaacctaattttaagttaactctca 36402843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 20507918 - 20507999
Alignment:
Q  106 aaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctca 186  Q
    |||||||||||||||| | |||| ||||||||   | |||||||||||||| |||||||| ||||||||||||||||||||||    
T  20507918 aaaactaaaacctccaatcgtgctacgttgcccaactatcgtgccacgatttctgcagaa-cctgattttaagttaactctca 20507999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 34477436 - 34477468
Alignment:
Q  13 tcaaaatctgtaacaaatctgcacccaaaaata 45  Q
    |||||||||||||||||||||||||||||||||    
T  34477436 tcaaaatctgtaacaaatctgcacccaaaaata 34477468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 2818763 - 2818845
Alignment:
Q  106 aaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacga-ttctgcagaaacctgattttaag-ttaactctca 186  Q
    |||||| ||||||||| | |||||| ||||||| ||||||||||||||| |||||||| ||||| |||||||| ||||||||||    
T  2818763 aaaactgaaacctccaatcgtgccatgttgcctagccatcgtgccacgatttctgcag-aacctaattttaagtttaactctca 2818845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 661227 - 661284
Alignment:
Q  129 acgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctca 186  Q
    ||||||||| |||||| | |||||||| |||||||| ||||||||||||||||||||||    
T  661227 acgttgcctagccatcataccacgatttctgcagaa-cctgattttaagttaactctca 661284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 1240126 - 1240080
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||    
T  1240126 ccatcgtggcacgattctccagaattctgattttaagttaactctca 1240080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 31542636 - 31542607
Alignment:
Q  16 aaatctgtaacaaatctgcacccaaaaata 45  Q
    ||||||||||||||||||||||||||||||    
T  31542636 aaatctgtaacaaatctgcacccaaaaata 31542607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 10529592 - 10529636
Alignment:
Q  142 atcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||    
T  10529592 atcgtggcacgattctccagaattctgattttaagttaactctca 10529636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 71 - 257
Target Start/End: Original strand, 6063889 - 6064075
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6063889 ccatcgtgccacgattttttcagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcataaacctgat 6063988  T
Q  171 tttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgct 257  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| |||||    
T  6063989 tttaagttaattctcacaattctccaccttgacttcaaatcagtgatgatgtcgatcagcaacctccttgctgctcaaacccttgct 6064075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 103 - 244
Target Start/End: Original strand, 7606878 - 7607019
Alignment:
Q  103 caaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttga 202  Q
    ||||||||| |||||||||| |||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7606878 caaaaaactgaaacctccatcgtgccacgttgcccagccatcgtgtcacgattctgcagaaacctgattttaagttaactctcacaattctccaccttga 7606977  T
Q  203 cttcaaatcagtgatgatgccgatcatcaacctccttgctgc 244  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  7606978 cttcaaatcagtgatgatgccaatcatcaacctccttgctgc 7607019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 71 - 244
Target Start/End: Complemental strand, 5899576 - 5899401
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| | | ||||||||| |||| ||||||||||||||    
T  5899576 ccatcgtgccatgatttttccagtgccttgcctaaaaaactaaaacatccatcgtgccacgttgcccttcaatcgtgccatgattatgcagaaacctgat 5899477  T
Q  171 ttta--agttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgc 244  Q
    | ||  |||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||    
T  5899476 tataagagttaactctcacaattctccaccttgacttcaaatcagtgacgatgccaatcattaacctccttgctgc 5899401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 60 - 244
Target Start/End: Complemental strand, 11170273 - 11170089
Alignment:
Q  60 ccgccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattc-tg 158  Q
    |||||||||||| |||| |||||||||||||||||||||||||  ||||||  |||||||||| |||||||||||||  || | ||||||||||||| ||    
T  11170273 ccgccagcgcacaatcgagccacgatttttccagtgccttgcctcaaaaaccgaaacctccatcgtgccacgttgcccagcaaccgtgccacgattcctg 11170174  T
Q  159 cagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgc 244  Q
    ||||  | |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  11170173 cagat-cttgattttaagttaactctcacaattctccaccttgacttcaaatcaatgatgatgccaatcatcaacctccttgctgc 11170089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 71 - 244
Target Start/End: Original strand, 18097305 - 18097478
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattctgcagaaacctga 169  Q
    |||||||||||||||||||||  |||||||||  |||| || ||||||||| | |||||||||||||  ||||||||||||||||| |||||||||||||    
T  18097305 ccatcgtgccacgatttttcctatgccttgcctcaaaa-ctgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattttgcagaaacctga 18097403  T
Q  170 ttttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgc 244  Q
    ||||||||||||||||| |||||||||||||||||| ||||||| ||||||||| |||||||||| |||||||||    
T  18097404 ttttaagttaactctcacaattctccaccttgactttaaatcagggatgatgccaatcatcaaccaccttgctgc 18097478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 38210184 - 38210069
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||    
T  38210184 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctgat 38210085  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  38210084 tttaagttaactctca 38210069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 50493793 - 50493678
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  || |||||||||||||||||||||||||||||    
T  50493793 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgat 50493694  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  50493693 tttaagttaactctca 50493678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 62 - 186
Target Start/End: Complemental strand, 35777289 - 35777165
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcag 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||  |||||||||||||||||||    
T  35777289 gccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagctgtcgtgccacgattctgcag 35777190  T
Q  162 aaacctgattttaagttaactctca 186  Q
    ||| || ||||||||||||||||||    
T  35777189 aaatctaattttaagttaactctca 35777165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 38889886 - 38889759
Alignment:
Q  60 ccgccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgc 159  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||    
T  38889886 ccgccagcgcaccatcgtgccacgatttttccaatgccttgcctaaaaaactgaaacctccatcgtgccacgttgccttgccatcgtaccacgattctgc 38889787  T
Q  160 ag-aaacctgattttaagttaactctca 186  Q
    || |||||| ||||||||||||||||||    
T  38889786 agaaaacctaattttaagttaactctca 38889759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 53896637 - 53896752
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||  || |||||||||||||||||||||||||||||    
T  53896637 ccatcgtgccacgatttttccagtaccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagcaatcgtgccacgattctgcagaaacctgat 53896736  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  53896737 tttaagttaactctca 53896752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 71 - 244
Target Start/End: Original strand, 10956447 - 10956619
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattc-tgcagaaacctg 168  Q
    ||||||||||||||||||||||||||||||||| |||| || ||||||||| | |||||| | || |  ||||| |||||||||||| ||||||  ||||    
T  10956447 ccatcgtgccacgatttttccagtgccttgccccaaaa-ctgaaacctccaatcgtgccatgatgtccagccat-gtgccacgattcctgcagat-cctg 10956543  T
Q  169 attttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgc 244  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10956544 attttaagttaactctcacaattatccaccttgacttcaaatcagtgatgatgccaatcatcaacctccttgctgc 10956619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 22114725 - 22114840
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||| |||||||||||||||||||  ||||||| |||||||||| |||||||||||||   |||||||||||||||||| ||||||||||||    
T  22114725 ccatcgtgccacaatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgcccaaccatcgtgccacgattctacagaaacctgat 22114824  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  22114825 tttaagttaactctca 22114840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 4308771 - 4308874
Alignment:
Q  141 catcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttg 240  Q
    ||||||| ||||||||| |||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  4308771 catcgtggcacgattctccagaattctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccaatcatcaaccttcttg 4308870  T
Q  241 ctgc 244  Q
    ||||    
T  4308871 ctgc 4308874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 60 - 200
Target Start/End: Complemental strand, 11163019 - 11162879
Alignment:
Q  60 ccgccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgatt-ctg 158  Q
    ||||||||||||||||||||||| |||||||||||||||||||  ||||||| |||||||||| |||||||||||||  || |||||||||||||| |||    
T  11163019 ccgccagcgcaccatcgtgccacaatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgcccagcaatcgtgccacgattcctg 11162920  T
Q  159 cagaaacctgattttaagttaactctcataattctccacctt 200  Q
    ||| | | |||||||||||||||||||| | || ||||||||    
T  11162919 cag-atcttgattttaagttaactctcacagttttccacctt 11162879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 143 - 244
Target Start/End: Complemental strand, 43228077 - 43227976
Alignment:
Q  143 tcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgct 242  Q
    ||||| ||||||||| |||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  43228077 tcgtggcacgattctccagaattctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccaatcatcaaccaccttgct 43227978  T
Q  243 gc 244  Q
    ||    
T  43227977 gc 43227976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 35918438 - 35918542
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctcctt 239  Q
    |||||||| ||||||||| || ||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  35918438 ccatcgtggcacgattctccataattctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccaatcatcaaccttctt 35918537  T
Q  240 gctgc 244  Q
    |||||    
T  35918538 gctgc 35918542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 10192413 - 10192525
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    ||||||||||||||||||||||||||||||||  |||| || |||||||||| ||||||||||||||||| ||||||||||||||| ||| ||| |||||    
T  10192413 ccatcgtgccacgatttttccagtgccttgcctcaaaa-ctgaaacctccatcgtgccacgttgccttgcgatcgtgccacgattccgcataaatctgat 10192511  T
Q  171 tttaagttaactct 184  Q
    ||| ||||||||||    
T  10192512 tttcagttaactct 10192525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 18099590 - 18099705
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattctgcagaaacctga 169  Q
    ||||||||||||||||||||||||| ||||||  |||| || ||||||||| | |||||||||||||  ||||||||||||||||| |||||||||||||    
T  18099590 ccatcgtgccacgatttttccagtgtcttgcctcaaaa-ctgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattttgcagaaacctga 18099688  T
Q  170 ttttaagttaactctca 186  Q
    |||||||||||||||||    
T  18099689 ttttaagttaactctca 18099705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 6066139 - 6066254
Alignment:
Q  15 aaaatctgtaacaaatctgcacccaaaaatannnnnnnnnnnnatccgccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaa 114  Q
    |||||||||||||||||||| ||||||||||            |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6066139 aaaatctgtaacaaatctgctcccaaaaatacattttatttttatccgccagcgcaccatcgtgccacgatgtttccagtgccttgcccaaaaaactaaa 6066238  T
Q  115 acctccattgtgccac 130  Q
    |||||||| |||||||    
T  6066239 acctccatcgtgccac 6066254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 10085493 - 10085605
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    ||||||||||||||||||||||||||||||||  |||| || |||||||||| ||||||||||||||||| ||| ||||||||||| ||| ||| |||||    
T  10085493 ccatcgtgccacgatttttccagtgccttgcctcaaaa-ctgaaacctccatcgtgccacgttgccttgcgatcatgccacgattccgcataaatctgat 10085591  T
Q  171 tttaagttaactct 184  Q
    ||| ||||||||||    
T  10085592 tttcagttaactct 10085605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 5886101 - 5885985
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacg-ttgccttgccatcgtgccacgattctgcagaaacctga 169  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||| ||||| |||||||| ||||  | | ||||||||||||||||| | |||||| |    
T  5886101 ccatcgtgccacgatttttccagtaccttgcctaaaaaactaaaacatccatcgtgccacgtttgcgcttcaatcgtgccacgattctgtaaaaacctaa 5886002  T
Q  170 ttttaagttaactctca 186  Q
    |||||||||||||||||    
T  5886001 ttttaagttaactctca 5885985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 5191490 - 5191375
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattctgcagaaacctga 169  Q
    |||||||||||||||||||||||| |||||||  |||| || ||||||||| | |||||||| ||||  || ||||||||||||||||||||||| ||||    
T  5191490 ccatcgtgccacgatttttccagtaccttgcctcaaaa-ctgaaacctccaatcgtgccacgatgcccagcaatcgtgccacgattctgcagaaatctga 5191392  T
Q  170 ttttaagttaactctca 186  Q
    |||||||||||||||||    
T  5191391 ttttaagttaactctca 5191375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 186
Target Start/End: Original strand, 6719521 - 6719649
Alignment:
Q  60 ccgccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc---attgtgccacgttgccttgccatcgtgccacgattc 156  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||||    || |||||||| |||| | | ||||||||||||||     
T  6719521 ccgccagcgcaccatcgtgccacgatttttccagtgcattgcctaaaaa-ctgaaacctctccaatcgtgccacgatgcccttcaatcgtgccacgatta 6719619  T
Q  157 tgcagaaacctgattttaagttaactctca 186  Q
     ||||||||||||||||||||||| |||||    
T  6719620 agcagaaacctgattttaagttaattctca 6719649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 47878633 - 47878716
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||| ||||||||| ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47878633 ccatcgtggcacgattctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgcc 47878716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 10595493 - 10595574
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatg 221  Q
    |||||||| ||||||||| ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10595493 ccatcgtggcacgattctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 10595574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 54192945 - 54192864
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatg 221  Q
    |||||||| ||||||||| ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  54192945 ccatcgtggcacgattctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 54192864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 25388714 - 25388654
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacg 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25388714 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacg 25388654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 16461901 - 16461818
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||| |||||| || ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16461901 ccatcgtggcacgatactccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgcc 16461818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 10094576 - 10094633
Alignment:
Q  166 ctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10094576 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgcc 10094633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 10901446 - 10901365
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatg 221  Q
    |||||||| |||||| || ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10901446 ccatcgtggcacgatactccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 10901365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 10201462 - 10201519
Alignment:
Q  166 ctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  10201462 ctgattttaagttaaatctcacaattctccaccttgacttcaaatcagtgatgatgcc 10201519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 25388666 - 25388620
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25388666 ccatcgtgccacgattctgcagaaacctgattttaagttaactctca 25388620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 3859365 - 3859319
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  3859365 ccatcgtgccacgattatgcagaaacctgattttaagttaactctca 3859319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 32264463 - 32264578
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctg 168  Q
    ||||||||||||||    ||||||| ||||||  ||||||| ||||||||| | |||||||||| ||  ||||||||||||||||| ||||| |||||||    
T  32264463 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactgaaacctccaatcgtgccacgttccca-gccatcgtgccacgatttctgca-aaacctg 32264560  T
Q  169 attttaagttaactctca 186  Q
    ||||||||||||||||||    
T  32264561 attttaagttaactctca 32264578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 457950 - 457882
Alignment:
Q  189 attctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgct 257  Q
    ||||||||||||||||  |||| ||| |||||||| |||||||||||||||||||| |||||| |||||    
T  457950 attctccaccttgactctaaattagtaatgatgccaatcatcaacctccttgctgctcaaacccttgct 457882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 26720385 - 26720270
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattg-tgccacgttgccttgccatcgtgccacgattc-tgcagaaacctg 168  Q
    |||||||||||||||||||||||||| |||||  |||   | ||||||||| |  |||||||||||   |||||||||||||||||| ||||||  ||||    
T  26720385 ccatcgtgccacgatttttccagtgctttgcctcaaact-tgaaacctccaatcctgccacgttgctcagccatcgtgccacgattcctgcagat-cctg 26720288  T
Q  169 attttaagttaactctca 186  Q
    ||||||||||||||||||    
T  26720287 attttaagttaactctca 26720270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 186
Target Start/End: Original strand, 6066256 - 6066289
Alignment:
Q  153 attctgcagaaacctgattttaagttaactctca 186  Q
    ||||||||||||||||||||||||||||||||||    
T  6066256 attctgcagaaacctgattttaagttaactctca 6066289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 101
Target Start/End: Complemental strand, 18162531 - 18162492
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttccagtgccttgc 101  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  18162531 gccagcgcaccatcgtggcacgatttttccagtgacttgc 18162492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 32218900 - 32218838
Alignment:
Q  124 gtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctca 186  Q
    |||||||||||||    ||||||||||||||| |||||||| ||||||||||||||||||||||    
T  32218900 gtgccacgttgcccaatcatcgtgccacgatttctgcagaa-cctgattttaagttaactctca 32218838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 48362122 - 48362184
Alignment:
Q  124 gtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctca 186  Q
    |||||||||||||   |||||||||||||||| || ||||| ||||||||||||||||||||||    
T  48362122 gtgccacgttgcccaaccatcgtgccacgatttctacagaa-cctgattttaagttaactctca 48362184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 5858245 - 5858199
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||||| ||||||||| ||||  ||||||||||||||||||||||    
T  5858245 ccatcgtggcacgattctccagattcctgattttaagttaactctca 5858199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 6063812 - 6063842
Alignment:
Q  15 aaaatctgtaacaaatctgcacccaaaaata 45  Q
    |||||||||||||||||||||||||||||||    
T  6063812 aaaatctgtaacaaatctgcacccaaaaata 6063842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 27101749 - 27101795
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||    
T  27101749 ccatcgtggcacgattctccagaattctgattttaagttaactctca 27101795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 35777336 - 35777306
Alignment:
Q  15 aaaatctgtaacaaatctgcacccaaaaata 45  Q
    |||||||||||||||||||||||||||||||    
T  35777336 aaaatctgtaacaaatctgcacccaaaaata 35777306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 38889932 - 38889902
Alignment:
Q  15 aaaatctgtaacaaatctgcacccaaaaata 45  Q
    |||||||||||||||||||||||||||||||    
T  38889932 aaaatctgtaacaaatctgcacccaaaaata 38889902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 43225875 - 43225829
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||    
T  43225875 ccatcgtggcacgattctccagaattctgattttaagttaactctca 43225829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 51727495 - 51727541
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||    
T  51727495 ccatcgtggcacgattctccagaattctgattttaagttaactctca 51727541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 71 - 257
Target Start/End: Complemental strand, 47179545 - 47179359
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||    
T  47179545 ccatcgtgccacgattttttcagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctgat 47179446  T
Q  171 tttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgct 257  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  47179445 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgctcaaacccttgct 47179359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 71 - 244
Target Start/End: Complemental strand, 51752222 - 51752048
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcc-caaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctga 169  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||   ||||||||||||||||||||||||||||||    
T  51752222 ccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgcccaaccatcgtgccacgattctgcagaaacctga 51752123  T
Q  170 ttttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgc 244  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51752122 ttttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccaatcatcaacctccttgctgc 51752048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 71 - 244
Target Start/End: Complemental strand, 20302316 - 20302142
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcc-caaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctga 169  Q
    |||||||||||| ||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||    
T  20302316 ccatcgtgccacaatttttccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgccttgccatcatgccgcgattctgcagaaatctga 20302217  T
Q  170 ttttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgc 244  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  20302216 ttttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccaatcatcaacatccttgctgc 20302142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 6822904 - 6822777
Alignment:
Q  60 ccgccagcgcaccatcgtgccacgatttttccagtgccttgcc-caaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctg 158  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||  ||||||||||||||||||||    
T  6822904 ccgccagcgcaccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgcccagccatcgtgccacgattctg 6822805  T
Q  159 cagaaacctgattttaagttaactctca 186  Q
    ||||||||||||||||||||||||||||    
T  6822804 cagaaacctgattttaagttaactctca 6822777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 71 - 244
Target Start/End: Complemental strand, 28842350 - 28842177
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattc-tgcagaaacctg 168  Q
    |||||||||||||||||||||||| ||||||| ||||| || ||||||||| | ||||||||| ||||||||||||||||||||||| | ||||  ||||    
T  28842350 ccatcgtgccacgatttttccagtaccttgcctaaaaa-ctgaaacctccaatcgtgccacgtagccttgccatcgtgccacgattcctacagat-cctg 28842253  T
Q  169 attttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgc 244  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28842252 attttaagttaactttcacaattctccaccttgacttcaaatcagtgatgatgccaatcatcaacctccttgctgc 28842177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 16226004 - 16225891
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   || ||||||||||||||||||||||||||||    
T  16226004 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccaaccgtcgtgccacgattctgcagaaacctgat 16225905  T
Q  171 tttaagttaactct 184  Q
    ||||||||||||||    
T  16225904 tttaagttaactct 16225891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 15 - 161
Target Start/End: Complemental strand, 16231514 - 16231368
Alignment:
Q  15 aaaatctgtaacaaatctgcacccaaaaatannnnnnnnnnnnatccgccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaa 114  Q
    |||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16231514 aaaatctgtaacaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatttttccagtgtcttgcccaaaaaactaaa 16231415  T
Q  115 acctccattgtgccacgttgccttgccatcgtgccacgattctgcag 161  Q
    |||||||| |||||||||||||  ||| |||||||||||||||||||    
T  16231414 acctccatcgtgccacgttgcccagccgtcgtgccacgattctgcag 16231368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 13761694 - 13761579
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    ||||||||||||||||||||||||||||||||  ||||||| ||||||||||  ||||||||||||  ||||||||||||||||||||||||||||||||    
T  13761694 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcatgccacgttgcccagccatcgtgccacgattctgcagaaacctgat 13761595  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  13761594 tttaagttaactctca 13761579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 47177194 - 47177080
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||  | | ||||||||||||||||||||||||||||    
T  47177194 ccatcgtgccacgatttttccagtgtcttgcccaaaaa-ctaaaacctccatcgtgccacgttgcccagtcgtcgtgccacgattctgcagaaacctgat 47177096  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  47177095 tttaagttaactctca 47177080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 157 - 257
Target Start/End: Complemental strand, 16228267 - 16228167
Alignment:
Q  157 tgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgc 256  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||    
T  16228267 tgcagaaacctgattttaagttaactcttacaattctccaccttgacttcaaatcagtgatgatgccaatcatcaacctccttgctgctcaaacccttgc 16228168  T
Q  257 t 257  Q
    |    
T  16228167 t 16228167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 51749896 - 51749780
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcc-caaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctga 169  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||| || ||||||||||   |||||||||||||||||||||||||| |||    
T  51749896 ccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctccatcgtaccacgttgcccaaccatcgtgccacgattctgcagaaacttga 51749797  T
Q  170 ttttaagttaactctca 186  Q
    |||||||||||||||||    
T  51749796 ttttaagttaactctca 51749780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 23783355 - 23783240
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||  |||  ||  ||||||||||||| ||||||||||||||    
T  23783355 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgat 23783256  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  23783255 tttaagttaactctca 23783240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 83 - 186
Target Start/End: Complemental strand, 20291386 - 20291282
Alignment:
Q  83 gatttttccagtgccttgcc-caaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaac 181  Q
    ||||||||||||||| |||| ||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20291386 gatttttccagtgccatgcctcaaaaaactgaaacctccaccgtgccacgttgccttgccatcgtgccacgattctgcagaaatctgattttaagttaac 20291287  T
Q  182 tctca 186  Q
    |||||    
T  20291286 tctca 20291282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 14098461 - 14098545
Alignment:
Q  139 gccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    ||||||||||||||||| |||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14098461 gccatcgtgccacgatttctgcagaatc-tgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgcc 14098545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 2393764 - 2393847
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||| ||||||||| ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2393764 ccatcgtggcacgattctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgcc 2393847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 6823741 - 6823643
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcc-caaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctg 168  Q
    ||||| |||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||   ||||||||||| ||||||||| |||||||    
T  6823741 ccatcatgccacgatttttccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgcccaaccatcgtgccatgattctgcaaaaacctg 6823643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 182
Target Start/End: Complemental strand, 28840535 - 28840424
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctg 168  Q
    |||||||||||| ||||||||||| ||||||| ||||| || ||||||||| | |||||||||||||||||||||||||||||||| |||||| | ||||    
T  28840535 ccatcgtgccacaatttttccagtaccttgcctaaaaa-ctgaaacctccaatcgtgccacgttgccttgccatcgtgccacgattcctgcag-atcctg 28840438  T
Q  169 attttaagttaact 182  Q
    ||||||||||||||    
T  28840437 attttaagttaact 28840424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 9526165 - 9526082
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||| |||||| || ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9526165 ccatcgtggcacgatgctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgcc 9526082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 10400252 - 10400367
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattctgcagaaacctga 169  Q
    ||||||||||||||| |||||||||| |||||  |||   | ||||||||| | |||||||||||||  || ||||||||||||||| ||||||||||||    
T  10400252 ccatcgtgccacgatatttccagtgctttgcctcaaact-tgaaacctccaatcgtgccacgttgcccagcaatcgtgccacgattccgcagaaacctga 10400350  T
Q  170 ttttaagttaactctca 186  Q
    |||||||||||||||||    
T  10400351 ttttaagttaactctca 10400367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 15823403 - 15823288
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctg 168  Q
    |||||||||||||||||||| ||||| |||||  |||   | ||||||||| | |||||||||||||  ||||||||||||||||| |||||| | ||||    
T  15823403 ccatcgtgccacgatttttctagtgctttgcctcaaact-tgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattcctgcag-atcctg 15823306  T
Q  169 attttaagttaactctca 186  Q
    ||||||||||||||||||    
T  15823305 attttaagttaactctca 15823288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 28201926 - 28201982
Alignment:
Q  167 tgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||||||||||||||| ||||||||||||||| || ||||||| |||||||||    
T  28201926 tgattttaagttaactctcacaattctccaccttgattttaaatcagcgatgatgcc 28201982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 186
Target Start/End: Complemental strand, 49687425 - 49687303
Alignment:
Q  64 cagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcca-ttgtgccacgttgccttgccatcgtgccacgatt-ctgcag 161  Q
    |||||||||||||||||||||    ||||||| ||||||  |||| || ||||||||| |||||||||||||||  |||||| |||||||||| || ||     
T  49687425 cagcgcaccatcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaacctccaattgtgccacgttgcccagccatcatgccacgatttctacat 49687327  T
Q  162 aaacctgattttaagttaactctca 186  Q
    || ||||||||||||||||||||||    
T  49687326 aa-cctgattttaagttaactctca 49687303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 188
Target Start/End: Original strand, 38925915 - 38925998
Alignment:
Q  106 aaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcata 188  Q
    |||||| ||||||||| | |||||||||||||  |||||||| |||||||| |||| ||| ||||||||||||||||||||||||    
T  38925915 aaaactgaaacctccaatcgtgccacgttgcccagccatcgtaccacgatttctgcggaa-cctgattttaagttaactctcata 38925998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 3580092 - 3580154
Alignment:
Q  121 attgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctgattttaagttaactc 183  Q
    |||||| ||||||||| ||| |||||||||||||| |||||  |||||||||||||||||||||    
T  3580092 attgtgtcacgttgccctgcaatcgtgccacgattcctgca-taacctgattttaagttaactc 3580154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 2617328 - 2617282
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||    
T  2617328 ccatcgtggcacgattctccagaattctgattttaagttaactctca 2617282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 47451488 - 47451407
Alignment:
Q  106 aaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacga-ttctgcagaaacctgattttaagttaactctca 186  Q
    |||||| ||||||||| | ||||||| |||||  ||||||||||||||| ||||||| ||| ||||||| |||||||||||||    
T  47451488 aaaactgaaacctccaatcgtgccacattgcccagccatcgtgccacgatttctgca-aaatctgatttgaagttaactctca 47451407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 71 - 244
Target Start/End: Original strand, 1047386 - 1047559
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||    
T  1047386 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctgat 1047485  T
Q  171 tttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgc 244  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1047486 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccaatcatcaacctccttgctgc 1047559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 71 - 257
Target Start/End: Complemental strand, 22136995 - 22136809
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||  |||  ||  ||||||||||||| ||||||||||||||    
T  22136995 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgat 22136896  T
Q  171 tttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgct 257  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  22136895 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgctcaaacccttgct 22136809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 71 - 257
Target Start/End: Complemental strand, 40552022 - 40551836
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||  |||  ||  ||||||||||||| ||||||||||||||    
T  40552022 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgat 40551923  T
Q  171 tttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgct 257  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  40551922 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgctcaaacccttgct 40551836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 62 - 186
Target Start/End: Original strand, 40837135 - 40837259
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcag 161  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| |   ||||||||||||||||||||||    
T  40837135 gccagcacaccatcgtgccacgatttttccagtgccttgcctaaaaaactgaaacctccatcgtgccacgttgtccgaccatcgtgccacgattctgcag 40837234  T
Q  162 aaacctgattttaagttaactctca 186  Q
    |||||||||||||||||||||||||    
T  40837235 aaacctgattttaagttaactctca 40837259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 2935187 - 2935072
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||  |||  ||| ||||||||||||| ||||||||||||||    
T  2935187 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctgat 2935088  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  2935087 tttaagttaactctca 2935072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 9027570 - 9027685
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||  |||  ||| ||||||||||||| ||||||||||||||    
T  9027570 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctgat 9027669  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  9027670 tttaagttaactctca 9027685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 22107984 - 22107869
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||  |||  ||  ||||||||||||| ||||||||||||||    
T  22107984 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctgcatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgat 22107885  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  22107884 tttaagttaactctca 22107869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 40549744 - 40549629
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||  |||  ||  ||||||||||||| ||||||||||||||    
T  40549744 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctgcatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgat 40549645  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  40549644 tttaagttaactctca 40549629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 62 - 186
Target Start/End: Complemental strand, 26804471 - 26804347
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattctgca 160  Q
    ||||||||||||||||||||||||||||||| |||||||||  |||| || ||||||||| | || ||||||||||  |||||||||||||||||||| |    
T  26804471 gccagcgcaccatcgtgccacgatttttccactgccttgcctcaaaa-ctgaaacctccaatcgtaccacgttgcccagccatcgtgccacgattctgta 26804373  T
Q  161 gaaacctgattttaagttaactctca 186  Q
    ||||||||||||||||||||||||||    
T  26804372 gaaacctgattttaagttaactctca 26804347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 44360 - 44258
Alignment:
Q  142 atcgtgccacgattc-tgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttg 240  Q
    ||||||||||||||| ||||||  | |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||| ||||||    
T  44360 atcgtgccacgattcctgcagat-cttgattttaagttaactctcacaattctccaccttgacttcaaatcaatgatgatgccaatcatcaacatccttg 44262  T
Q  241 ctgc 244  Q
    ||||    
T  44261 ctgc 44258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 3878439 - 3878324
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattctgcagaaacctga 169  Q
    |||||||||||||||||||||||||| |||||  |||   | ||||||||| | |||||||||||||  |||||||||||||||||||||||||| ||||    
T  3878439 ccatcgtgccacgatttttccagtgctttgcctcaaact-tgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattctgcagaaatctga 3878341  T
Q  170 ttttaagttaactctca 186  Q
    |||||||||||||||||    
T  3878340 ttttaagttaactctca 3878324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 30246690 - 30246609
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatg 221  Q
    |||||||| ||||||||| ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30246690 ccatcgtggcacgattctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 30246609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 7074488 - 7074405
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||| |||||| || ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7074488 ccatcgtggcacgatactccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgcc 7074405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 25405094 - 25405011
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||| |||||| || ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25405094 ccatcgtggcacgatactccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgcc 25405011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 25409851 - 25409770
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatg 221  Q
    |||||||| ||||||||| ||||   ||||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  25409851 ccatcgtggcacgattctccagatttctgattttaagttaacttttacaattctccaccttgacttcaaatcagtgatgatg 25409770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 186
Target Start/End: Original strand, 1049685 - 1049811
Alignment:
Q  60 ccgccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-attgtgccacgttgccttgccatcgtgccacgatt-ct 157  Q
    ||||||||||||| ||||||||||||||||||||| ||||| |   |||||| |||||||| || |||||||||||||  || |||||||||||||| ||    
T  1049685 ccgccagcgcaccttcgtgccacgatttttccagtaccttg-cttcaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacgattcct 1049783  T
Q  158 gcagaaacctgattttaagttaactctca 186  Q
    |||| | | ||||||||||||||||||||    
T  1049784 gcag-atcttgattttaagttaactctca 1049811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 3320531 - 3320615
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaact-ctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||| |||||| || ||||   ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  3320531 ccatcgtggcacgatgctccagatttctgattttaagttaacttctcacaattctccaccttgacttcaaatcagtgatgatgcc 3320615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 7349867 - 7349935
Alignment:
Q  189 attctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgct 257  Q
    ||||||||||||||||  |||| ||||||||||||||||||||||||||||||||| |||||| |||||    
T  7349867 attctccaccttgactctaaattagtgatgatgccgatcatcaacctccttgctgctcaaacccttgct 7349935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 27306651 - 27306765
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-attgtgccacgttgccttgccatcgtgccacgattctgcagaaacctga 169  Q
    |||||||||||||||||||||| || |||| ||  |||||| |||||||| || ||||||||||| |  ||||||||||||||||| |||| |||||| |    
T  27306651 ccatcgtgccacgatttttccaatgacttg-cctcaaaactgaaacctccaatcgtgccacgttgtccagccatcgtgccacgattttgca-aaacctta 27306748  T
Q  170 ttttaagttaactctca 186  Q
    |||||||||||||||||    
T  27306749 ttttaagttaactctca 27306765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 31156500 - 31156568
Alignment:
Q  189 attctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgct 257  Q
    ||||||||||||||||  |||| ||||||||||||||||||||||||||||||||| |||||| |||||    
T  31156500 attctccaccttgactctaaattagtgatgatgccgatcatcaacctccttgctgctcaaacccttgct 31156568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 35496 - 35381
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctg 168  Q
    |||||||||||||||||||||||||| |||||  |||   | ||||||||| | |||||||||||||| || |||||||||||||| |||||| | | ||    
T  35496 ccatcgtgccacgatttttccagtgctttgcctcaaact-tgaaacctccaatcgtgccacgttgcctagcaatcgtgccacgattcctgcag-atcttg 35399  T
Q  169 attttaagttaactctca 186  Q
    ||||||||||||||||||    
T  35398 attttaagttaactctca 35381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 25542397 - 25542283
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-attgtgccacgttgccttgccatcgtgccacgattctgcagaaacctga 169  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| || |||||||||||||  || ||||||||||  | |||||| | | |||    
T  25542397 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 25542300  T
Q  170 ttttaagttaactctca 186  Q
    |||||||||||||||||    
T  25542299 ttttaagttaactctca 25542283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 7092768 - 7092819
Alignment:
Q  189 attctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttg 240  Q
    ||||||||||||||||  |||| |||||||||||| ||||||||||||||||    
T  7092768 attctccaccttgactctaaattagtgatgatgccaatcatcaacctccttg 7092819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 7464981 - 7465035
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctc 194  Q
    |||||||| ||||||||| |||||  ||||||||||||||||||||| |||||||    
T  7464981 ccatcgtggcacgattctccagaattctgattttaagttaactctcacaattctc 7465035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 40946121 - 40946073
Alignment:
Q  141 catcgtgccacgattctgcagaaacctgattttaagttaactctcataa 189  Q
    ||||||| ||||||||| |||||  ||||||||||||||||||||||||    
T  40946121 catcgtggcacgattcttcagaattctgattttaagttaactctcataa 40946073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 48457487 - 48457443
Alignment:
Q  142 atcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||    
T  48457487 atcgtggcacgattctccagaattctgattttaagttaactctca 48457443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 71 - 257
Target Start/End: Original strand, 36559241 - 36559427
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||  |||  ||| ||||||||||||| ||||||||||||||    
T  36559241 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctgat 36559340  T
Q  171 tttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgct 257  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  36559341 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgctcaaacccttgct 36559427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 71 - 244
Target Start/End: Original strand, 19502433 - 19502606
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19502433 ccatcgtgccacgatttttccagtgccttgcctaaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 19502532  T
Q  171 tttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgc 244  Q
    |||||||||||| ||| ||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  19502533 tttaagttaactatcacaattctccaccttgaattcaaatcagtgataatgccaatcatcaacctccttgctgc 19502606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 71 - 182
Target Start/End: Original strand, 19504767 - 19504878
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||    
T  19504767 ccatcgtgccacgatttttccagtgccttgcctaaaaaattaaaacctccatcgtgccacgttgccttgccatcgtgccatgattctgctgaaacctgat 19504866  T
Q  171 tttaagttaact 182  Q
    ||||||||||||    
T  19504867 tttaagttaact 19504878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 27104632 - 27104519
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    ||||||||||||||||||||||||||||||||  ||||||| |||||||||| ||||||||||||| | | ||||||||||||||||||||||| |||||    
T  27104632 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgcccttcaatcgtgccacgattctgcagaaatctgat 27104533  T
Q  171 tttaagttaactct 184  Q
    ||||||||||||||    
T  27104532 tttaagttaactct 27104519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 24162634 - 24162750
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcc-caaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctga 169  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||   |||| ||||||||||||||||||||| |||    
T  24162634 ccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgcccaaccattgtgccacgattctgcagaaacttga 24162733  T
Q  170 ttttaagttaactctca 186  Q
    |||||||||||||||||    
T  24162734 ttttaagttaactctca 24162750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 36561560 - 36561675
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |  |||  ||| ||||||||||||| ||||||||||||||    
T  36561560 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgtgaagcccagccgtcgtgccacgattgtgcagaaacctgat 36561659  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  36561660 tttaagttaactctca 36561675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 45332558 - 45332673
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||| ||  |||  ||| ||||||||||||||||||||||||||||    
T  45332558 ccatcgttccacgatttttccagttccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagccgtcgtgccacgattctgcagaaacctgat 45332657  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  45332658 tttaagttaactctca 45332673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 223
Target Start/End: Original strand, 6259237 - 6259389
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctg 168  Q
    ||||||||||||||||||||||||| ||| ||  |||| || |||| |||| | ||||||||||||   ||||||||||||||||| |||||||| ||||    
T  6259237 ccatcgtgccacgatttttccagtgactttcctcaaaa-ctgaaacatccaatagtgccacgttgcacagccatcgtgccacgatttctgcagaa-cctg 6259334  T
Q  169 attttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  6259335 attttaagttaactctcttaattctccaccttgactttaaatcagtgatgatgcc 6259389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 62 - 182
Target Start/End: Original strand, 43623959 - 43624079
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattctgca 160  Q
    |||||||||||||||||||||||||||| ||||||||||||  |||| || ||||||||| | |||||| ||||||  |||||||||||| |||||||||    
T  43623959 gccagcgcaccatcgtgccacgattttttcagtgccttgcctcaaaa-ctgaaacctccaatcgtgccatgttgcccagccatcgtgccatgattctgca 43624057  T
Q  161 gaaacctgattttaagttaact 182  Q
    ||||||||||||||||||||||    
T  43624058 gaaacctgattttaagttaact 43624079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 20050506 - 20050589
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||| ||||||||| |||||   |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  20050506 ccatcgtggcacgattctccagaattttgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgcc 20050589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 22712978 - 22713061
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||| ||||||||| ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22712978 ccatcgtggcacgattctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgcc 22713061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 30478714 - 30478631
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||| ||||||||| ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30478714 ccatcgtggcacgattctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgcc 30478631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 17943258 - 17943177
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatg 221  Q
    |||||||| ||||||||| ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17943258 ccatcgtggcacgattctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 17943177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 2740642 - 2740559
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||| |||||| || ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2740642 ccatcgtggcacgatactccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgcc 2740559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 39686684 - 39686601
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||| |||||| || ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39686684 ccatcgtggcacgatgctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgcc 39686601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 28462819 - 28462877
Alignment:
Q  163 aacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatg 221  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28462819 aacctgattttaagttaactttcataattctccaccttgacttcaaatcagtgatgatg 28462877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 191
Target Start/End: Original strand, 21521117 - 21521237
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctg 168  Q
    |||||||| |||||||||||||||| |||||   |||| || ||||||||| | |||||||||||||  ||||||||||||||||| ||| || ||||||    
T  21521117 ccatcgtggcacgatttttccagtggcttgcttcaaaa-ctgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattcctgtag-aacctg 21521214  T
Q  169 attttaagttaactctcataatt 191  Q
    |||||||||||||||||| ||||    
T  21521215 attttaagttaactctcacaatt 21521237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 30262268 - 30262326
Alignment:
Q  165 cctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||    
T  30262268 cctgattttaagttaactctcacaattctccacctcgacttcaaatcaatgatgatgcc 30262326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 35216184 - 35216252
Alignment:
Q  189 attctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgct 257  Q
    ||||||||||||||||  |||| |||||||||||| |||||||||||||||||||| |||||| |||||    
T  35216184 attctccaccttgactctaaattagtgatgatgccaatcatcaacctccttgctgctcaaacccttgct 35216252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 40032503 - 40032584
Alignment:
Q  106 aaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacga-ttctgcagaaacctgattttaagttaactctca 186  Q
    |||||| ||||||||| | |||||||||||||  ||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  40032503 aaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgatttctgcag-aacctgattttaagttaactctca 40032584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 6264543 - 6264658
Alignment:
Q  68 gcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattg-tgccacgttgccttgccatcgtgccacgatt-ctgcagaaac 165  Q
    |||||||||||||||||||||||||||| ||||||  |||| || |||| |||| |  ||||||||||||   ||||||||| || ||| |||||||| |    
T  6264543 gcaccatcgtgccacgatttttccagtgacttgcctcaaaa-ctgaaacatccaatcatgccacgttgcccaaccatcgtgcaacaatttctgcagaa-c 6264640  T
Q  166 ctgattttaagttaactc 183  Q
    ||||||||||||||||||    
T  6264641 ctgattttaagttaactc 6264658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 21518938 - 21518978
Alignment:
Q  182 tctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  21518938 tctcataat-ctccacattgacttcaaatcagtgatgatgcc 21518978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 18800696 - 18800732
Alignment:
Q  65 agcgcaccatcgtgccacgatttttccagtgccttgc 101  Q
    |||||||||||||||||| |||||||||||| |||||    
T  18800696 agcgcaccatcgtgccacaatttttccagtgacttgc 18800732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 45280457 - 45280501
Alignment:
Q  142 atcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||    
T  45280457 atcgtggcacgattctccagaattctgattttaagttaactctca 45280501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 71 - 257
Target Start/End: Complemental strand, 24307 - 24121
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||  |||  ||  ||||||||||||| ||||||||||||||    
T  24307 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgat 24208  T
Q  171 tttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgcgcaaacctttgct 257  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  24207 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgctcaaacccttgct 24121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 22032 - 21917
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||  |||  ||  ||||||||||||| ||||||||||||||    
T  22032 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgat 21933  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  21932 tttaagttaactctca 21917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 12937 - 13052
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  12937 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgccttgacatcgtgccacgattctgcagaaacctgat 13036  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  13037 tttaagttaactctca 13052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 69716 - 69888
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattctgcagaaacctga 169  Q
    |||| |||| |||||||||||||||| |||||  |||   | ||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||    
T  69716 ccattgtgctacgatttttccagtgctttgcctcaaact-tgaaacctccaatcgtgccacgttgcctagccatcgtgccacgattctgcagaaatctga 69814  T
Q  170 ttttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctg 243  Q
    ||||||||||||||| | |||||||||| ||||||||||||||||||||||| | |||||||||| ||||||||    
T  69815 ttttaagttaactcttacaattctccactttgacttcaaatcagtgatgatgtcaatcatcaaccaccttgctg 69888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 184
Target Start/End: Original strand, 73418 - 73540
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattctgca 160  Q
    |||||| |||||||||||||| ||||||||||||| |||||  |||   | ||||||||| | |||||||||||||| ||||||||||||||||||||||    
T  73418 gccagcacaccatcgtgccacaatttttccagtgctttgcctcaaact-tgaaacctccaatcgtgccacgttgcctagccatcgtgccacgattctgca 73516  T
Q  161 gaaacctgattttaagttaactct 184  Q
     ||| |||||||||||||||||||    
T  73517 taaatctgattttaagttaactct 73540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 71 - 244
Target Start/End: Complemental strand, 2746 - 2573
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatt-gtgccacgttgccttgccatcgtgccacgattc-tgcagaaacctg 168  Q
    |||||||||||||||||||||||| |||||||  |||| || ||||||||| | |||||||||||||| || |||||| ||| |||| ||||||  | ||    
T  2746 ccatcgtgccacgatttttccagtaccttgcctcaaaa-ctgaaacctccaatcgtgccacgttgcctagcaatcgtgtcacaattcctgcagat-cttg 2649  T
Q  169 attttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgccgatcatcaacctccttgctgc 244  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  2648 attttaagttaactctcacaattctccaccttgacttcaaatcagtgatgattccaatcatcaacctccttgctgc 2573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 6044 - 5929
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 170  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||  |||  ||| ||||||||||||| ||||||||||||||    
T  6044 ccatcatgccacgatttttccagtgccttgcctaaaaaactaaaacctccatcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctgat 5945  T
Q  171 tttaagttaactctca 186  Q
    ||||||||||||||||    
T  5944 tttaagttaactctca 5929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1764 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1764
Description:

Target: scaffold1764; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 1156 - 1073
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcataattctccaccttgacttcaaatcagtgatgatgcc 223  Q
    |||||||| ||||||||| ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1156 ccatcgtggcacgattctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgcc 1073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 29005 - 28943
Alignment:
Q  124 gtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29005 gtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctca 28943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 14885 - 14769
Alignment:
Q  71 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-attgtgccacgttgccttgccatcgtgccacgattc-tgcagaaacctg 168  Q
    ||||||||||||||  ||||||||| ||||||  | || || |||| ||| || || |||||||||| | | ||||||||||||||| ||||||| ||||    
T  14885 ccatcgtgccacgaaatttccagtgacttgcctcataa-ctgaaacttcccatcgttccacgttgcccttcaatcgtgccacgattcctgcagaatcctg 14787  T
Q  169 attttaagttaactctca 186  Q
    ||||||||||||||||||    
T  14786 attttaagttaactctca 14769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1674 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 95 - 145
Alignment:
Q  189 attctccaccttgacttcaaatcagtgatgatgccgatcatcaacctcctt 239  Q
    ||||||||||||||||  |||| |||||||||||| |||||||||||||||    
T  95 attctccaccttgactctaaattagtgatgatgccaatcatcaacctcctt 145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 41974 - 42020
Alignment:
Q  140 ccatcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||    
T  41974 ccatcgtggcacgattcttcagaattctgattttaagttaactctca 42020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 1302 - 1347
Alignment:
Q  141 catcgtgccacgattctgcagaaacctgattttaagttaactctca 186  Q
    ||||||| ||||||||| |||||  |||||||||||||||||||||    
T  1302 catcgtggcacgattctccagaattctgattttaagttaactctca 1347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University