View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1552_low_8 (Length: 224)
Name: NF1552_low_8
Description: NF1552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1552_low_8 |
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| [»] scaffold0312 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 949329 - 949525
Alignment:
| Q |
16 |
gaacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcgaaactcgg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
949329 |
gaacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcaaaactcgg |
949428 |
T |
|
| Q |
116 |
aaacaatgttgaagctatttccacagaagtggataaaaatagtaatggtttgcaacaatatgttatagcaaaaggagtgaagaaattgggtgagaag |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
949429 |
aaacaatgttgaagctatttccacagaagtggataaaaatagtaatggtttgcaacaatatgttatagcaaaaggagtgaataaattgggtgagaag |
949525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 960301 - 960497
Alignment:
| Q |
16 |
gaacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcgaaactcgg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
960301 |
gaacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcgaaactcgg |
960400 |
T |
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| Q |
116 |
aaacaatgttgaagctatttccacagaagtggataaaaatagtaatggtttgcaacaatatgttatagcaaaaggagtgaagaaattgggtgagaag |
212 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
960401 |
aaacaatgttgaagctgtttcaacagaagtggataaaaatagtaatggtttgcaacaatatgtaatagcaaaaggagtgaagaaattgggtgagaag |
960497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 942340 - 942536
Alignment:
| Q |
16 |
gaacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcgaaactcgg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
942340 |
gaacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtataacttcattggaatctatggttgatttcaccatttcgaaactcgg |
942439 |
T |
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| Q |
116 |
aaacaatgttgaagctatttccacagaagtggataaaaatagtaatggtttgcaacaatatgttatagcaaaaggagtgaagaaattgggtgagaag |
212 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
942440 |
aaacaatgttgaagctgtttcaacagaagtggataaaaatagtaatggtttgcaacaatatgtaatagcaaaaggagtgaagaaattgggtgagaag |
942536 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 971610 - 971806
Alignment:
| Q |
16 |
gaacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcgaaactcgg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
971610 |
gaacaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtataacttcattggaatctatggttgatttcaccatttcgaaactcgg |
971709 |
T |
|
| Q |
116 |
aaacaatgttgaagctatttccacagaagtggataaaaatagtaatggtttgcaacaatatgttatagcaaaaggagtgaagaaattgggtgagaag |
212 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
971710 |
aaacaatgttgaagctgtttcaacagaagtggataaaaatagtaatggtttgcaacaatatgttatagcaaaaggagtgaataaattgggtgagaag |
971806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 936422 - 936609
Alignment:
| Q |
18 |
acaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcgaaactcggaa |
117 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
936422 |
acaataagtgagtgtgaagaaaatggcatcaaaggagaggaaaagctttgtgtaacatcattggaatctatggttgatttcactacttcgaaacttggaa |
936521 |
T |
|
| Q |
118 |
acaatgttgaagctatttccacagaagtggataaaaatagtaatggtttgcaacaatatgttatagcaaaaggagtgaagaaattggg |
205 |
Q |
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||||||| |||||| |||| ||||||||| | ||| | || | || |||||| ||||||| || |||||||| |||||||||||||| |
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| T |
936522 |
acaatgtcgaagctgtttcaacagaagtgaaaaaagaaagcagtgacttgcaagaatatgtaatggcaaaaggtgtgaagaaattggg |
936609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 909672 - 909862
Alignment:
| Q |
18 |
acaataagtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcgaaactcggaa |
117 |
Q |
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||||||||||| ||||||||| |||| |||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||| || ||| || |||| |
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| T |
909672 |
acaataagtgaatgtgaagcatatggtatcaaaggagaggaaaagctttgtgtgacatcattggaatctatgattgatttcactactttgaagcttggaa |
909771 |
T |
|
| Q |
118 |
acaatgttgaagctatttccacagaagtggataaaaatagtaatggtttgcaacaatatgttatagcaaaaggagtgaagaaattgggtgagaa |
211 |
Q |
| |
|
|||||||||| || |||| |||||||| || | | || |||||| ||||||||||| |||||||| |||||||||||| |||| ||||| |
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| T |
909772 |
acaatgttgacactgtttcaacagaagtaaatggagaaag---tggtttacaacaatatgtaatagcaaacggagtgaagaaaatgggagagaa |
909862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 212
Target Start/End: Complemental strand, 419927 - 419742
Alignment:
| Q |
24 |
agtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcgaaactcggaaacaatg |
123 |
Q |
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||||||||||||| | || |||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||| ||| ||||| || || |||| |
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| T |
419927 |
agtgagtgtgaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatg |
419828 |
T |
|
| Q |
124 |
ttgaagctatttccacagaagtggataaaaatagtaatggtttgcaacaatatgttatagcaaaaggagtgaagaaattgggtgagaag |
212 |
Q |
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|||| ||| |||| ||||||||| | ||| | ||||| ||| ||||||||| |||||| ||||||||||| |||||||||||| |
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| T |
419827 |
ttgaggctgtttcaacagaagtgaacaaagaaagtaa---tttacaacaatatacaatagcatctggagtgaagaagttgggtgagaag |
419742 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 24 - 212
Target Start/End: Original strand, 975234 - 975419
Alignment:
| Q |
24 |
agtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcgaaactcggaaacaatg |
123 |
Q |
| |
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||||||||||||| | || |||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||| | ||| ||||| || || |||| |
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| T |
975234 |
agtgagtgtgaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcacgacttctaaacttggtaaaaatg |
975333 |
T |
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| Q |
124 |
ttgaagctatttccacagaagtggataaaaatagtaatggtttgcaacaatatgttatagcaaaaggagtgaagaaattgggtgagaag |
212 |
Q |
| |
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|||| ||| |||| ||||||||| | ||| | ||||| ||| ||||||||| |||||| ||||||||||| |||||||||||| |
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| T |
975334 |
ttgaggctgtttcaacagaagtgaacaaagaaagtaa---tttacaacaatatacaatagcatctggagtgaagaagttgggtgagaag |
975419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 924236 - 924395
Alignment:
| Q |
49 |
aaggtgaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcgaaactcggaaacaatgttgaagctatttccacagaagtgga |
148 |
Q |
| |
|
|||| ||||||||| ||||||||| ||||| || || |||||||||||||||| ||| || || |||||||||||||||||| |||| ||||||||| | |
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| T |
924236 |
aaggagaggaaaagagttgtgtaacatcattagagtcaatggttgatttcactacttctaagcttggaaacaatgttgaagctgtttcaacagaagtgaa |
924335 |
T |
|
| Q |
149 |
taaaaatagtaatggtttgcaacaatatgttatagcaaaaggagtgaagaaattgggtgagaa |
211 |
Q |
| |
|
||| | || || | | ||||||||| | |||||||||||||| ||||| ||||||||||| |
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| T |
924336 |
caaagaaag---tgatatacaacaatatataatagcaaaaggagttaagaagttgggtgagaa |
924395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 916185 - 916280
Alignment:
| Q |
49 |
aaggtgaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcgaaactcggaaacaatgttgaagctatttccacagaag |
144 |
Q |
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|||| ||||||||| ||||||||| ||||| ||||| |||||||||||||||| ||| || || |||||||||||||||||| |||| ||||||| |
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| T |
916185 |
aaggagaggaaaagagttgtgtaacatcattagaatcaatggttgatttcactacttctaagcttggaaacaatgttgaagctgtttcaacagaag |
916280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 212
Target Start/End: Original strand, 10644 - 10829
Alignment:
| Q |
24 |
agtgagtgtgaagcaaatggcatcaaaggtgaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcgaaactcggaaacaatg |
123 |
Q |
| |
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||||||||||||| | || |||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||| ||| ||||| || || |||| |
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| T |
10644 |
agtgagtgtgaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatg |
10743 |
T |
|
| Q |
124 |
ttgaagctatttccacagaagtggataaaaatagtaatggtttgcaacaatatgttatagcaaaaggagtgaagaaattgggtgagaag |
212 |
Q |
| |
|
|||| ||| |||| ||||||||| | ||| | ||||| ||| ||||||||| |||||| ||||||||||| |||||||||||| |
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|
| T |
10744 |
ttgaggctgtttcaacagaagtgaacaaagaaagtaa---tttacaacaatatacaatagcatctggagtgaagaagttgggtgagaag |
10829 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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