View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1553-INSERTION-1 (Length: 544)
Name: NF1553-INSERTION-1
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553-INSERTION-1 |
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Alignment Details
Target: chr7 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 8 - 541
Target Start/End: Original strand, 21483632 - 21484164
Alignment:
| Q |
8 |
ttgtggaggtacaatgagaggtgtttgatctagccatgatgtttggttgaaacacgtgttcgattcaggtgcaaatgtgtttgctgtgttttggttctga |
107 |
Q |
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| T |
21483632 |
ttgtggaggtacaatgagaggtgtttgatctagccatgatgtttggttgaaacatgcgttcgattcaggtgcaaatgtgtttgctgtgttttggttctga |
21483731 |
T |
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| Q |
108 |
cacggatcttgaaaatgttgttgttgaggaacaatatttgaaggtattattgtgttcgtgttggcgttttctttgagtcttttgttgtgaagatgactag |
207 |
Q |
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| T |
21483732 |
cacggatcttgaaaatgatgttgttgaggaacaatatttgaaggtattattgtgttcgtgttggcgttttctttgagtcttttgttatgaagatgactag |
21483831 |
T |
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| Q |
208 |
tttgaacccattcaagaatgagcttcaacaattgtttcatcccttcttttccaccacctaatctcctagcagcactttcgatcgtcgatttcttaagctt |
307 |
Q |
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| T |
21483832 |
tttgaacccattcaagaatgagcttcaacaattgtttcatcccttcttttccaccacctaatctcctagcagcactttcaatcgttgatttcttaagctt |
21483931 |
T |
|
| Q |
308 |
cacattcctcaaatcattcgcggagacactgtctttgttcgatttaagccactccaagaaaaccatactcatttcatcacttacaccgtcaacatgcacc |
407 |
Q |
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| T |
21483932 |
cacattcctcaaatcattcgcggagacactgtctttgttcgatttaagccactccaagaaaaccatactcatttcatcacttacaccatc-acatgcacc |
21484030 |
T |
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| Q |
408 |
tagttcatctccttgaatactctcttccccatttacaccgtcacacacaaaaacatcgtcgttattctcctcgatattcacttgttgcggtttattttcc |
507 |
Q |
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| T |
21484031 |
taattcatctccttgaatactctcttccccatttacaccgtcacacacaaaaacatcgtcgttattctcctcgatattcacttgttgcggtttattttcc |
21484130 |
T |
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| Q |
508 |
cgatcatcatgcgcaatcatcggaacttgttgat |
541 |
Q |
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| T |
21484131 |
cgatcatcatgcactatcatcggaacttgttgat |
21484164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 541
Target Start/End: Original strand, 26551516 - 26551591
Alignment:
| Q |
466 |
tcgttattctcctcgatattcacttgttgcggtttattttcccgatcatcatgcgcaatcatcggaacttgttgat |
541 |
Q |
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|||||||| ||||| |||||||||||||| ||||||||||||| ||||||||| | ||||| | || |||||||| |
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| T |
26551516 |
tcgttattttcctcaatattcacttgttgtggtttattttccctttcatcatgcactatcattgaaatttgttgat |
26551591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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