View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1553-INSERTION-2 (Length: 401)
Name: NF1553-INSERTION-2
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553-INSERTION-2 |
 | |
|
| [»] scaffold0259 (1 HSPs) |
| | |
|
| [»] chr7 (8 HSPs) |
| |
|
| [»] chr8 (6 HSPs) |
| |
|
| [»] chr4 (5 HSPs) |
| |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr3 (6 HSPs) |
| |
|
| [»] scaffold0016 (1 HSPs) |
| |
|
| [»] chr2 (6 HSPs) |
| |
|
| [»] scaffold0022 (1 HSPs) |
| |
|
| [»] scaffold0028 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0259 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 8 - 356
Target Start/End: Complemental strand, 2895 - 2547
Alignment:
| Q |
8 |
aaaataaaccataaacagataactctattctccacaataaactcttgaacgaatccatctcactcttacacgtctcccttatttttcaaagagatcacaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2895 |
aaaataaaccataaacagataactctattctccacaataaactcttgaacgaatccatctcactcttacacgtctcccttatttttcaaagagatcacaa |
2796 |
T |
|
| Q |
108 |
agccttatttaacgttttccactctcttgtccaactcgttttatcatgtcctcttggtgagcttccacacatgggattaagagacttgttagtgcgttta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2795 |
agccttatttaacgttttccactctcttgtccaactcgttttatcatgtcctcttggtgagcttccacacatgggattaagagacttgttagtgcgttta |
2696 |
T |
|
| Q |
208 |
gttcagaaacaatcttaggaaacatggaaagcatctaaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttg |
307 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2695 |
gttcagaaacaatcttaggaaacacggaaagcatctaaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttg |
2596 |
T |
|
| Q |
308 |
acatgcttcttgatttaatggatgagtgaaaagatttattgtgttttat |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2595 |
acatgcttcttgatttaatggatgagtgaaaagatttattgtgttttat |
2547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 401
Target Start/End: Complemental strand, 10530513 - 10530140
Alignment:
| Q |
8 |
aaaataaaccataaacagataactctattctccacaataaactcttgaacgaatccatctcactcttacacgtctcccttatttttcaaagagatcacaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10530513 |
aaaataaaccataaacagataactctattctccacaataaactcttgaacgaatccatctcactcttacacgtctcccttatttttcaaagagatcacaa |
10530414 |
T |
|
| Q |
108 |
agccttatttaacgttttccactctcttgtccaactcgttttatcatgtcctcttggtgagcttccacacatgggattaagagacttgttagtgcgttta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10530413 |
agccttatttaacgttttccactctcttgtcc-------------------tcttggtgagcttccacacatgggattaagagacttgttagtgcgttcg |
10530333 |
T |
|
| Q |
208 |
gttcagaaacaatcttaggaaacatggaaagcatctaaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
10530332 |
gttcagaaacaatcttaggaaacatggaaagcatctaaggtaagggctctagtcttgaccatg-tttaaatgaaaatgatagattatgatgttgaatttg |
10530234 |
T |
|
| Q |
308 |
acatgcttcttgatttaatggatgagtgaaaagatttattgtgttttataatttttcttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10530233 |
atatgcttcttgatttaatggatgagtgaaaagatttatcgtgttttattatttttcttgtagttgctaattataagaattggtgagttgcaat |
10530140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 235 - 401
Target Start/End: Original strand, 29587564 - 29587731
Alignment:
| Q |
235 |
aaagcatctaaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagt |
334 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||| | |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29587564 |
aaagcgtctaaggtaagggctctagtcttgaccatgatttgaatgaaaatgatagattatgatgttgaatttgatatgcttcttgatttaatggatgagt |
29587663 |
T |
|
| Q |
335 |
g-aaaagatttattgtgttttataatttttcttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
| |||||||||||| |||||||| | |||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
29587664 |
gaaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaat |
29587731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 239 - 401
Target Start/End: Original strand, 9745118 - 9745279
Alignment:
| Q |
239 |
catctaaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaa |
338 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
9745118 |
catccaaggtaagggctctagtcttgaccatg-tttaaaggaaaatgatagattatgatgttgaatttgatatgcttcttgattcaatggatgagtgaaa |
9745216 |
T |
|
| Q |
339 |
agatttattgtgttttataatttttcttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
9745217 |
atatttattgtgttttattatttttcttgtagttgataattatatgaattggtgagttgcaat |
9745279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 243 - 369
Target Start/End: Original strand, 13167881 - 13168007
Alignment:
| Q |
243 |
taaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaagat |
342 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
13167881 |
taaggtaagggctctagtcttgaccatgatttaagtgaaaatgatagattatgatgttgaatttgatatgcttcttgatttaatggatgagggaaaagat |
13167980 |
T |
|
| Q |
343 |
ttattgtgttttataatttttcttgta |
369 |
Q |
| |
|
|||||||||||||| ||||| |||||| |
|
|
| T |
13167981 |
ttattgtgttttattattttgcttgta |
13168007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 246 - 401
Target Start/End: Original strand, 8311731 - 8311888
Alignment:
| Q |
246 |
ggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaagattta |
345 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
8311731 |
ggtaagtgctctagtcttgaccatgatttaactgaaaataatagattatgatgttgaatttgacatgcttcttgattcgatggatgggtgaaaagattta |
8311830 |
T |
|
| Q |
346 |
ttgtg-ttttataatttttc-ttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
|| || |||||| | ||||| ||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
8311831 |
ttatgtttttattacttttctttgtagttgataattataagaattggtgatttgcaat |
8311888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 257 - 349
Target Start/End: Complemental strand, 46002887 - 46002795
Alignment:
| Q |
257 |
tagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaagatttattgt |
349 |
Q |
| |
|
|||| |||| |||||||||| ||||||| ||||||| |||| |||||||||| ||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
46002887 |
tagtcttgatcatgatttaaatgaaaataataggttgtgatattgaatttgatatgcttcttgattcaatggatgagtgaaaagattaattgt |
46002795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 248 - 343
Target Start/End: Original strand, 31211093 - 31211188
Alignment:
| Q |
248 |
taagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaagatt |
343 |
Q |
| |
|
||||||||||||| |||| |||||| || ||||||| |||||||||||| || ||||||| ||||||||||||||||| |||| ||||| ||||| |
|
|
| T |
31211093 |
taagggctctagtcttgatcatgatctagatgaaaataataggttatgatattaaatttgatatgcttcttgatttaatagatgcgtgaagagatt |
31211188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 401
Target Start/End: Complemental strand, 10529572 - 10529530
Alignment:
| Q |
359 |
tttttcttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
||||| ||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
10529572 |
ttttttttgtagttgataattatatgaattggtgagttgcaat |
10529530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 401
Target Start/End: Complemental strand, 9818545 - 9818177
Alignment:
| Q |
13 |
aaaccataaacagataactctattctccacaataaactcttgaacgaatccatctcactcttacacgtctcccttatttttcaaagagatcacaaagcct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9818545 |
aaaccataaacagataactctattctccacaataaactcttgaacgaatccatctcactcttacacgtctcccttatttttcaaagagatcacaaagcct |
9818446 |
T |
|
| Q |
113 |
tatttaacgttttccactctcttgtccaactcgttttatcatgtcctcttggtgagcttccacacatgggattaagagacttgttagtgcgtttagttca |
212 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9818445 |
tatttaacgttttccactctcttgtcc-------------------tcttggtgagcttccacacatgggattaagagacttgttagtgcgttcggttca |
9818365 |
T |
|
| Q |
213 |
gaaacaatcttaggaaacatggaaagcatctaaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |||||||||||||||||| ||| |
|
|
| T |
9818364 |
gaaacaatcttaggaaacatggaaagcatctaaggtaagggctctagtcttgaccatg-tttaaatgaaaatgatagattatgatgttgaatttgatatg |
9818266 |
T |
|
| Q |
313 |
cttcttgatttaatggatgagtgaaaagatttattgtgttttataatttttcttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9818265 |
cttcttgatttaatggatgagtgaaaagatttatcgtgttttattatttttcttgtagttgctaattataagaattggtgagttgcaat |
9818177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 246 - 401
Target Start/End: Complemental strand, 42077625 - 42077471
Alignment:
| Q |
246 |
ggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaagattta |
345 |
Q |
| |
|
|||| ||| |||||| ||||||||| ||||| ||| |||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
42077625 |
ggtaggggttctagtcttgaccatg-tttaaatgagaatgatagattatgatgttgaatttgatacgcttcttgatttaatggatgagtgaaaagattta |
42077527 |
T |
|
| Q |
346 |
ttgtgttttataatttttcttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42077526 |
ttgtgttttattatttttcttgtagttgttaattataagaattggtgagttgcaat |
42077471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 236 - 401
Target Start/End: Complemental strand, 21232012 - 21231848
Alignment:
| Q |
236 |
aagcatctaaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtg |
335 |
Q |
| |
|
|||| |||||||||| ||||||||| |||||| || ||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21232012 |
aagcgtctaaggtaatggctctagtcttgaccgtg-tttaaatgaaaatgatagattatgatgttgaatttgatatgcttcttgatttaatggatgagtg |
21231914 |
T |
|
| Q |
336 |
aaaagatttattgtgttttataatttttcttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
|||||||||||| |||||||| | |||||||||||||| |||||||| ||||||||||||| |||| |
|
|
| T |
21231913 |
aaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttccaat |
21231848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 243 - 373
Target Start/End: Original strand, 9881085 - 9881215
Alignment:
| Q |
243 |
taaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaagat |
342 |
Q |
| |
|
||||||||||||| |||| |||| |||| ||| | ||||||| |||| ||||||| || ||||||| |||||| | |||| ||||||||||||||||||| |
|
|
| T |
9881085 |
taaggtaagggctatagtcttgatcatgttttgaatgaaaataatagattatgatcttaaatttgatatgcttatcgattcaatggatgagtgaaaagat |
9881184 |
T |
|
| Q |
343 |
ttattgtgttttataatttttcttgtagttg |
373 |
Q |
| |
|
||| | |||||||| | |||||||||||||| |
|
|
| T |
9881185 |
ttactatgttttattaattttcttgtagttg |
9881215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 242 - 343
Target Start/End: Original strand, 24423220 - 24423320
Alignment:
| Q |
242 |
ctaaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaaga |
341 |
Q |
| |
|
||||||||||| | ||||| ||||||||||||||| |||||||||||| ||||||| |||||||| ||||||||| ||| | |||||||||||| ||| |
|
|
| T |
24423220 |
ctaaggtaaggaccctagtcttgaccatgatttaactgaaaatgatagtttatgatattgaattttgtatgcttctt-attcattggatgagtgaagaga |
24423318 |
T |
|
| Q |
342 |
tt |
343 |
Q |
| |
|
|| |
|
|
| T |
24423319 |
tt |
24423320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 338
Target Start/End: Complemental strand, 29115664 - 29115604
Alignment:
| Q |
278 |
tgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaa |
338 |
Q |
| |
|
||||||| ||||||||||| |||||||||| ||||||| ||||| |||||||||||||| |
|
|
| T |
29115664 |
tgaaaatagtaggttatgatattgaatttgatatgcttcatgattcgatggatgagtgaaa |
29115604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 237 - 401
Target Start/End: Complemental strand, 41943180 - 41943017
Alignment:
| Q |
237 |
agcatctaaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtga |
336 |
Q |
| |
|
||||||||||| || ||||||||| ||||||||| ||||| |||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41943180 |
agcatctaaggcaaaggctctagtcttgaccatg-tttaaatgaaaatgatagattatgttgttgaatttgatatgcttcttgatttaatggatgagtga |
41943082 |
T |
|
| Q |
337 |
aaagatttattgtgttttataatttttcttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41943081 |
aaagatttattgtgttttattatttttcttgtagttgctaattataagaattggtgagttgcaat |
41943017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 241 - 356
Target Start/End: Original strand, 3295290 - 3295405
Alignment:
| Q |
241 |
tctaaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaag |
340 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||| ||||| |||||| |||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
3295290 |
tctaaggtaagagctctagtcttgaccatgatttaagtgaaactgatagattatgatgttgaatttgatatgcttcttgatttaatggatgagagaaaag |
3295389 |
T |
|
| Q |
341 |
atttattgtgttttat |
356 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
3295390 |
atttattgtgttttat |
3295405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 310 - 401
Target Start/End: Complemental strand, 10336174 - 10336083
Alignment:
| Q |
310 |
atgcttcttgatttaatggatgagtgaaaagatttattgtgttttataatttttcttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10336174 |
atgcttcttgatttaatggatgagtgaaaagatttagtgtgttttattatttttcttgtagttgcaaattataagaattggtgagttgcaat |
10336083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 31519263 - 31519152
Alignment:
| Q |
235 |
aaagcatctaaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagt |
334 |
Q |
| |
|
||||| || ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | ||| ||||||| |
|
|
| T |
31519263 |
aaagcgtccaaggtaaaggctctagtcttgaccatgatttaattgaaaatgataggttatgacgttgaatttgatatgcttcttgactcaatagatgagt |
31519164 |
T |
|
| Q |
335 |
gaaaagatttat |
346 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31519163 |
gaaaagatttat |
31519152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 236 - 307
Target Start/End: Complemental strand, 10344808 - 10344738
Alignment:
| Q |
236 |
aagcatctaaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttg |
307 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||| ||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
10344808 |
aagcatctaaggtaagggttctagtcttgaccatt-tttaaatgaaaatgatagattatgatgttgaatttg |
10344738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 248 - 401
Target Start/End: Complemental strand, 31654726 - 31654574
Alignment:
| Q |
248 |
taagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaagatttatt |
347 |
Q |
| |
|
||||||||||||| ||||||||| ||||| |||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31654726 |
taagggctctagtcttgaccatg-tttaaatgaaaatgatagattatgatgttggatttgatatgcttcttgatttaatggatgagtgaaaagatttatt |
31654628 |
T |
|
| Q |
348 |
gtgttttataatttttcttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31654627 |
gtgttttattatttttcttgtagttgctaattataagaattggtgagttgcaat |
31654574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 243 - 401
Target Start/End: Complemental strand, 13380378 - 13380221
Alignment:
| Q |
243 |
taaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaagat |
342 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| || |||||||||| | ||||||||||||||||| |
|
|
| T |
13380378 |
taaggtaagggttctagtcttgaccatgatttaagtgaaaatgataggttatgacgttgaatttgatatacttcttgattca-tggatgagtgaaaagat |
13380280 |
T |
|
| Q |
343 |
ttattgtgttttataatttttcttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
||||| |||||||| | |||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
13380279 |
ttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaat |
13380221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 265 - 401
Target Start/End: Complemental strand, 51443661 - 51443525
Alignment:
| Q |
265 |
accatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaagatttattgtgttttataatttttc |
364 |
Q |
| |
|
|||||||||| | |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | ||||| |
|
|
| T |
51443661 |
accatgatttgaatgaaaatgatagattatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattatgttttattaattttc |
51443562 |
T |
|
| Q |
365 |
ttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
51443561 |
ttgtagttgataattatatgaattggtgagttgcaat |
51443525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 401
Target Start/End: Complemental strand, 8311247 - 8311186
Alignment:
| Q |
340 |
gatttattgtgttttataatttttcttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
|||||||| ||||| || | ||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
8311247 |
gatttattatgtttgattaattttcttgtagttaataattataagaattggtgggttgcaat |
8311186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 240 - 401
Target Start/End: Complemental strand, 15990330 - 15990169
Alignment:
| Q |
240 |
atctaaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaa |
339 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15990330 |
atctaaggtaagggctctagtcttgaccatgatttaactgaaaatgatagattatgacgttgaatttgatatgcttcttgatttaatggatgagtgaaaa |
15990231 |
T |
|
| Q |
340 |
gatttattgtgttttataatttttcttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
|| ||||| |||||||| | |||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
15990230 |
gaattattatgttttattaattttcttgtagttgataattataagaattggtgggttgcaat |
15990169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 242 - 401
Target Start/End: Complemental strand, 40888848 - 40888690
Alignment:
| Q |
242 |
ctaaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaaga |
341 |
Q |
| |
|
||||||||||||| ||||| ||| |||||||||||||||||||||||| |||||| ||||||||| | ||||||||||||| | |||||||||||||||| |
|
|
| T |
40888848 |
ctaaggtaagggccctagtcttggccatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttgattca-tggatgagtgaaaaga |
40888750 |
T |
|
| Q |
342 |
tttattgtgttttataatttttcttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
|||||| | |||||| | |||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
40888749 |
tttattatattttattaattttcttgtagttgataattatatgaattggtgagttgcaat |
40888690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 243 - 346
Target Start/End: Complemental strand, 52641489 - 52641386
Alignment:
| Q |
243 |
taaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaagat |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| | ||||||||||||||||||| |
|
|
| T |
52641489 |
taaggtaagggctctagttttgaccatgatttaattgaaaatgatagattatgatgttgaatttgatatgcttcttgactcaatggatgagtgaaaagat |
52641390 |
T |
|
| Q |
343 |
ttat |
346 |
Q |
| |
|
|||| |
|
|
| T |
52641389 |
ttat |
52641386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 244 - 401
Target Start/End: Original strand, 29453643 - 29453803
Alignment:
| Q |
244 |
aaggtaagggctctagttttgaccatgatttaattgaaaatgataggt----tatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaa |
339 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| |||||||||||| | ||||| |||||||||| ||||||||||||| | |||||||||||||| |
|
|
| T |
29453643 |
aaggtaaggactctagttttgaccatg-tttaaatgaaaatgatagatagattatgacattgaatttgatatgcttcttgattca-tggatgagtgaaaa |
29453740 |
T |
|
| Q |
340 |
gatttattgtgtttt-ataatttttcttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
|||||||| |||||| || | |||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
29453741 |
gatttattatgtttttattaattttcttgtagttgataattatatgaattggtgagttgcaat |
29453803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 249 - 347
Target Start/End: Complemental strand, 19544811 - 19544714
Alignment:
| Q |
249 |
aagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaagatttatt |
347 |
Q |
| |
|
|||||||||||| ||| |||||| ||| ||||| |||||||||||||||||||| |||| |||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
19544811 |
aagggctctagtcatgatcatgatctaaatgaaagtgataggttatgatgttgaa-ttgatatgcttattgattcgatggatgagtgaaaagatttatt |
19544714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 334
Target Start/End: Complemental strand, 11650691 - 11650592
Alignment:
| Q |
235 |
aaagcatctaaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagt |
334 |
Q |
| |
|
||||||| ||||||||||||| |||| || |||||||||||| |||||| || |||| |||| |||||||||| ||||||||||||| ||| ||||||| |
|
|
| T |
11650691 |
aaagcatataaggtaagggctatagtcttaaccatgatttaaaagaaaataattggttgtgatattgaatttgatatgcttcttgattcaattgatgagt |
11650592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 252 - 401
Target Start/End: Original strand, 107863 - 108011
Alignment:
| Q |
252 |
ggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaagatttattgtgt |
351 |
Q |
| |
|
||||||||| ||||||||| ||||| |||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
107863 |
ggctctagtcttgaccatg-tttaaatgaaaatgatagattatgatgttgaatttgatatgctccttgatttaatggatgagtgaaaagatttattgtat |
107961 |
T |
|
| Q |
352 |
tttataatttttcttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
107962 |
tttattatttttgttgtagttgctaattataagaattggtgagttgcaat |
108011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 233 - 401
Target Start/End: Complemental strand, 27977317 - 27977150
Alignment:
| Q |
233 |
ggaaagcatctaaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatga |
332 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||| ||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27977317 |
ggaaagcgtctaaggtaagggctctagtcttaaccatg-tttaaatgaaaatgatagattatgatgttgaatttgatatgcttcttgatttaatggatga |
27977219 |
T |
|
| Q |
333 |
gtgaaaagatttattgtgttttataatttttcttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
||||||||||||||| ||||| || | |||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
27977218 |
gtgaaaagatttattatgtttcattaattttcttgtagttgataattatatgaatttgtgagttgcaat |
27977150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 233 - 401
Target Start/End: Complemental strand, 28063845 - 28063678
Alignment:
| Q |
233 |
ggaaagcatctaaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatga |
332 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||| ||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28063845 |
ggaaagcgtctaaggtaagggctctagtcttaaccatg-tttaaatgaaaatgatagattatgatgttgaatttgatatgcttcttgatttaatggatga |
28063747 |
T |
|
| Q |
333 |
gtgaaaagatttattgtgttttataatttttcttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
||||||||||||||| ||||| || | |||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
28063746 |
gtgaaaagatttattatgtttcattaattttcttgtagttgataattatatgaatttgtgagttgcaat |
28063678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 244 - 401
Target Start/End: Complemental strand, 16131237 - 16131081
Alignment:
| Q |
244 |
aaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaagatt |
343 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||| || || |||||||||||||||| |
|
|
| T |
16131237 |
aaggtaagggctctagtcttgaccatggtttaattgaaaatgataggttatgatgctgaattcgacatgcttcttga-ttcatagatgagtgaaaagatt |
16131139 |
T |
|
| Q |
344 |
tattgtgttttataatttttcttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
|| | | |||||| | |||| ||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
16131138 |
tactatattttattaatttttttgtagttgataattatatgaattggtgagttgcaat |
16131081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 272 - 401
Target Start/End: Complemental strand, 29046689 - 29046562
Alignment:
| Q |
272 |
tttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaagatttattgtgttttataatttttcttgtagt |
371 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| |||||| ||||||||| |||||| |||||||||||||| |
|
|
| T |
29046689 |
tttaaatgaaaatgatagattatgatgttgaatttgatatgctccttgatttaatggatgattgaaaatatttattgtattttattatttttcttgtagt |
29046590 |
T |
|
| Q |
372 |
tgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
||||||| ||||||||||||||||||||| |
|
|
| T |
29046589 |
tgctaat--taagaattggtgagttgcaat |
29046562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 243 - 356
Target Start/End: Complemental strand, 28497349 - 28497237
Alignment:
| Q |
243 |
taaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaagat |
342 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||| |||||||||||||| |
|
|
| T |
28497349 |
taaggtaagggctctagtcttgaccatgatttaattgaaaatgataggttatgatgttgaattcgacatgcttcttga-ttcatgaatgagtgaaaagat |
28497251 |
T |
|
| Q |
343 |
ttattgtgttttat |
356 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
28497250 |
ttattatgttttat |
28497237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 245 - 401
Target Start/End: Original strand, 22403747 - 22403915
Alignment:
| Q |
245 |
aggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttct------------tgatttaatggatga |
332 |
Q |
| |
|
|||||||||||||||| || |||||||||||| ||||||| |||| |||||||||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
22403747 |
aggtaagggctctagtctttaccatgatttaactgaaaataatagattatgatgttgaatttgatatgcttcttgattcgatggatgattcgatggatga |
22403846 |
T |
|
| Q |
333 |
gtgaaaagatttattgtgttttataatttttcttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
||||||||||||||| |||||||| | |||||||| |||| |||||||||||||||||| |||||||| |
|
|
| T |
22403847 |
gtgaaaagatttattatgttttattaattttcttgaagttaataattataagaattggtgggttgcaat |
22403915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 245 - 401
Target Start/End: Original strand, 2023 - 2178
Alignment:
| Q |
245 |
aggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaagattt |
344 |
Q |
| |
|
|||||||||||||||| |||||||| |||||| |||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2023 |
aggtaagggctctagtcttgaccat-atttaaatgaaaacaatagattatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagattt |
2121 |
T |
|
| Q |
345 |
attgtgttttataatttttcttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
||| |||||||| | |||||||||||||| |||||||| |||||||||| ||||||| |
|
|
| T |
2122 |
attatgttttattaattttcttgtagttgataattatatgaattggtgacttgcaat |
2178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 358 - 401
Target Start/End: Complemental strand, 148439 - 148396
Alignment:
| Q |
358 |
atttttcttgtagttgctaattataagaattggtgagttgcaat |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
148439 |
atttttcttgtagttgctaattataagaattggtgagttgcaat |
148396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 347
Target Start/End: Complemental strand, 18927255 - 18927154
Alignment:
| Q |
247 |
gtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttctt-gatttaatggatgagtgaaaagattta |
345 |
Q |
| |
|
||||||||||| || |||||||| ||||| ||||||| ||||||||||| ||||||||||| ||||||||| |||| || ||||| ||| | ||||||| |
|
|
| T |
18927255 |
gtaagggctcttgtcttgaccattatttagatgaaaataataggttatgaagttgaatttgatatgcttcttggattcaacggatgggtggagagattta |
18927156 |
T |
|
| Q |
346 |
tt |
347 |
Q |
| |
|
|| |
|
|
| T |
18927155 |
tt |
18927154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University