View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1553-INSERTION-4 (Length: 408)

Name: NF1553-INSERTION-4
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1553-INSERTION-4
NF1553-INSERTION-4
[»] chr5 (12 HSPs)
chr5 (7-175)||(301101-301269)
chr5 (215-408)||(301298-301490)
chr5 (327-404)||(39051662-39051738)
chr5 (327-404)||(38603740-38603816)
chr5 (327-404)||(39050738-39050814)
chr5 (315-403)||(8358206-8358293)
chr5 (314-404)||(5163697-5163786)
chr5 (316-408)||(42963201-42963292)
chr5 (314-408)||(42962060-42962153)
chr5 (326-380)||(8359427-8359481)
chr5 (327-404)||(38602712-38602789)
chr5 (327-403)||(11907153-11907227)
[»] chr4 (9 HSPs)
chr4 (327-403)||(54823249-54823324)
chr4 (314-404)||(31205699-31205788)
chr4 (327-403)||(54822428-54822503)
chr4 (314-408)||(21570409-21570502)
chr4 (314-404)||(31204591-31204680)
chr4 (315-408)||(21569288-21569380)
chr4 (322-361)||(54372791-54372830)
chr4 (314-408)||(44219014-44219107)
chr4 (318-399)||(42713504-42713584)
[»] chr8 (8 HSPs)
chr8 (314-405)||(44770603-44770693)
chr8 (314-408)||(41767150-41767243)
chr8 (314-380)||(43414418-43414484)
chr8 (314-375)||(43415986-43416047)
chr8 (347-403)||(44769749-44769804)
chr8 (322-361)||(11081064-11081103)
chr8 (326-404)||(41766171-41766248)
chr8 (327-403)||(9189444-9189518)
[»] chr7 (12 HSPs)
chr7 (314-405)||(43704441-43704531)
chr7 (314-404)||(35045884-35045973)
chr7 (326-403)||(35044668-35044745)
chr7 (314-403)||(36584896-36584984)
chr7 (326-408)||(23153616-23153697)
chr7 (326-408)||(47535708-47535789)
chr7 (327-380)||(40321119-40321172)
chr7 (327-403)||(33070655-33070729)
chr7 (314-405)||(42520259-42520348)
chr7 (326-380)||(42521271-42521325)
chr7 (343-404)||(40322225-40322285)
chr7 (316-367)||(16957432-16957483)
[»] chr3 (7 HSPs)
chr3 (314-408)||(21248243-21248336)
chr3 (314-404)||(50003213-50003302)
chr3 (316-404)||(21247275-21247362)
chr3 (317-404)||(50002453-50002539)
chr3 (318-408)||(50765761-50765849)
chr3 (325-403)||(55387637-55387714)
chr3 (348-408)||(5409409-5409468)
[»] chr2 (6 HSPs)
chr2 (316-405)||(10330745-10330833)
chr2 (327-404)||(38593081-38593157)
chr2 (327-404)||(38596677-38596753)
chr2 (326-408)||(371953-372034)
chr2 (327-404)||(38594037-38594113)
chr2 (327-404)||(38597633-38597709)
[»] chr1 (2 HSPs)
chr1 (314-403)||(9850006-9850094)
chr1 (316-368)||(18655486-18655538)
[»] chr6 (6 HSPs)
chr6 (327-404)||(13561328-13561404)
chr6 (327-404)||(13562286-13562362)
chr6 (315-382)||(24317087-24317154)
chr6 (314-404)||(25437820-25437908)
chr6 (327-403)||(11724288-11724362)
chr6 (348-408)||(24318050-24318109)
[»] scaffold0013 (2 HSPs)
scaffold0013 (333-403)||(27887-27956)
scaffold0013 (333-405)||(32158-32229)


Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 301101 - 301269
Alignment:
Q  7 acggtcctccgaactcacctagtgacccaacatgactatggtatatgcatttttgtatttgggttggatcaatatttgctatgaaaaccaaaaatcgatc 106  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  301101 acggtcctccgaactcccctaatgacccaacatgactatggtatatgcatttttgtatttgggttggatcaatatttgctatgtaaaccaaaaatcgatc 301200  T
Q  107 cctaaacttgttaacctttgtctatnnnnnnntaaatgaaaatcgatccaatccattaataaaacaaca 175  Q
    ||||||||||||||||||| |||||       |||||||||||||||||||||||||||||||||||||    
T  301201 cctaaacttgttaacctttttctataaaaaaataaatgaaaatcgatccaatccattaataaaacaaca 301269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 215 - 408
Target Start/End: Original strand, 301298 - 301490
Alignment:
Q  215 gataggtgcttaaggttgcgcataggatcagatatgaacattataattatcagattttttggcttaattattatccggtctcttaacttaannnnnnnnc 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||        |    
T  301298 gataggtgcttaaggttgcgcataggatcagatatgaacattataattatcagattttttggcttaattattatccggttccttaacttaattttatttc 301397  T
Q  315 gaattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaacctct 408  Q
    |||||||||||||||||||||||||||| |||||| || ||| |||||||||||||||||||||||||  || |||||||||||||||||||||    
T  301398 gaattgatcctctaactattaaacgttataaaatgatcttttctctttgttttagccatcaatttgatccta-ttttattaattttaaacctct 301490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 327 - 404
Target Start/End: Complemental strand, 39051738 - 39051662
Alignment:
Q  327 taactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaac 404  Q
    ||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||  || |||||||||||||||||    
T  39051738 taactattaaatgtttcaaaatggtcctttatctttgttttagtcatcaatttgatccta-ttttattaattttaaac 39051662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 327 - 404
Target Start/End: Complemental strand, 38603816 - 38603740
Alignment:
Q  327 taactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaac 404  Q
    |||||||||||| || ||||||||||||||||||||||||||| |||||||||| |  || |||||||||||||||||    
T  38603816 taactattaaacttttcaaaatggtcctttatctttgttttagtcatcaatttggtccta-ttttattaattttaaac 38603740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 327 - 404
Target Start/End: Original strand, 39050738 - 39050814
Alignment:
Q  327 taactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaac 404  Q
    ||||||||||||||| |||||||||||||||||||| |||||| ||| |||||| | ||| |||||||||||||||||    
T  39050738 taactattaaacgtttcaaaatggtcctttatctttattttagtcataaatttggtcata-ttttattaattttaaac 39050814  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 403
Target Start/End: Original strand, 8358206 - 8358293
Alignment:
Q  315 gaattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaa 403  Q
    |||||||||| |||| |||||||||||  ||||||||| |||||||||||||||| ||||| |||| | ||| ||||||||||||||||    
T  8358206 gaattgatcccctaattattaaacgttttaaaatggtcttttatctttgttttagtcatcattttggtcata-ttttattaattttaaa 8358293  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 314 - 404
Target Start/End: Original strand, 5163697 - 5163786
Alignment:
Q  314 cgaattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaac 404  Q
    ||||||| ||| |||||||||||| ||| ||||||| ||||||||||||||||||   ||||||||| | ||| |||||||||||||||||    
T  5163697 cgaattggtcccctaactattaaatgtttcaaaatgatcctttatctttgttttaattatcaatttggtcata-ttttattaattttaaac 5163786  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 408
Target Start/End: Complemental strand, 42963292 - 42963201
Alignment:
Q  316 aattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaacctct 408  Q
    ||||| |||||||||||||||||||| |||  ||||| ||||||||||||||   ||||||||| ||  || |||||||||||||||||||||    
T  42963292 aattggtcctctaactattaaacgtttcaatttggtcatttatctttgttttcatcatcaatttaatccta-ttttattaattttaaacctct 42963201  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 314 - 408
Target Start/End: Original strand, 42962060 - 42962153
Alignment:
Q  314 cgaattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaacctct 408  Q
    ||||||| ||| |||||||||||||| |  ||| ||||||||||||||||||||   |||||||||| |  || |||||||||||||||||||||    
T  42962060 cgaattggtcccctaactattaaacgctttaaattggtcctttatctttgttttcatcatcaatttggtccta-ttttattaattttaaacctct 42962153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 380
Target Start/End: Complemental strand, 8359481 - 8359427
Alignment:
Q  326 ctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttg 380  Q
    |||||||||||| |||  ||||||||| |||||||||||||||| ||||| ||||    
T  8359481 ctaactattaaaagttttaaaatggtcttttatctttgttttagtcatcattttg 8359427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 404
Target Start/End: Original strand, 38602712 - 38602789
Alignment:
Q  327 taactattaaacgttacaaaatggtcctttatc-tttgttttagccatcaatttgattatatttttattaattttaaac 404  Q
    |||||||||||||||  ||||||||||| |||| ||| |||||| ||| |||||| | ||| |||||||||||||||||    
T  38602712 taactattaaacgttttaaaatggtcctctatcttttattttagtcataaatttggtcata-ttttattaattttaaac 38602789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 403
Target Start/End: Complemental strand, 11907227 - 11907153
Alignment:
Q  327 taactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaa 403  Q
    ||||||||||| ||| |||  |||||||| ||||||||||| | |||||||||| | ||| ||||||||||||||||    
T  11907227 taactattaaatgtttcaatttggtcctt-atctttgttttcgtcatcaatttggtcata-ttttattaattttaaa 11907153  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 327 - 403
Target Start/End: Complemental strand, 54823324 - 54823249
Alignment:
Q  327 taactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaa 403  Q
    |||||||||||||||  |||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||    
T  54823324 taactattaaacgttttaaaatggtcctttatctttgttttagtcatcaatttgatcata-ttttattaattttaaa 54823249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 404
Target Start/End: Complemental strand, 31205788 - 31205699
Alignment:
Q  314 cgaattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaac 404  Q
    ||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||   || |||||| | ||| |||||||||||||||||    
T  31205788 cgaattggtcccctaactattaaacgtttcaaaatggtcctttatctttgttttaattattaatttggtcata-ttttattaattttaaac 31205699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 403
Target Start/End: Original strand, 54822428 - 54822503
Alignment:
Q  327 taactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaa 403  Q
    |||||||| |||||| |||||||||||||||| |||||||||| ||||||||||||  || ||||||||||||||||    
T  54822428 taactattgaacgtttcaaaatggtcctttatatttgttttagtcatcaatttgatccta-ttttattaattttaaa 54822503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 314 - 408
Target Start/End: Complemental strand, 21570502 - 21570409
Alignment:
Q  314 cgaattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaacctct 408  Q
    ||||||| ||| |||||||||||||||| |||  ||||| ||||||||||||||   ||||||||||||  || |||||||||||||||||||||    
T  21570502 cgaattggtcccctaactattaaacgtttcaatttggtcatttatctttgttttcatcatcaatttgatccta-ttttattaattttaaacctct 21570409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 314 - 404
Target Start/End: Original strand, 31204591 - 31204680
Alignment:
Q  314 cgaattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaac 404  Q
    ||||||| ||| |||||||||||||||| |||||||||| ||||||||| |||||  |||||||||| |  || |||||||||||||||||    
T  31204591 cgaattggtcccctaactattaaacgtttcaaaatggtcatttatctttattttaatcatcaatttggtccta-ttttattaattttaaac 31204680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 408
Target Start/End: Original strand, 21569288 - 21569380
Alignment:
Q  315 gaattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaacctct 408  Q
    |||||| ||| |||||||||||||||| |||  ||||| ||||||||||||||   |||| |||| || ||| |||||||||||||||||||||    
T  21569288 gaattggtcccctaactattaaacgtttcaatttggtcatttatctttgttttcatcatctatttaatcata-ttttattaattttaaacctct 21569380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 361
Target Start/End: Original strand, 54372791 - 54372830
Alignment:
Q  322 tcctctaactattaaacgttacaaaatggtcctttatctt 361  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  54372791 tcctctaactattaaacgttccaaattggtcctttatctt 54372830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 408
Target Start/End: Complemental strand, 44219107 - 44219014
Alignment:
Q  314 cgaattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaacctct 408  Q
    ||||||| ||| |||||||||||||  |  ||| ||||||||||||||||||||   |||||||||| |  || ||||||| |||||||||||||    
T  44219107 cgaattggtcccctaactattaaacactttaaattggtcctttatctttgtttttatcatcaatttggtccta-ttttattgattttaaacctct 44219014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 399
Target Start/End: Original strand, 42713504 - 42713584
Alignment:
Q  318 ttgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattt 399  Q
    |||||||  |||||||||| |||| |||  ||||  |||||||||||||| |||||||||||| || || ||||||||||||    
T  42713504 ttgatcccttaactattaagcgtttcaatttggttttttatctttgtttttgccatcaatttggttcta-ttttattaattt 42713584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 314 - 405
Target Start/End: Complemental strand, 44770693 - 44770603
Alignment:
Q  314 cgaattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaacc 405  Q
    ||||||| |||||||||||||||| |||  |||||||||||||| ||||||||||| ||||||||||||  || ||||||||||||||||||    
T  44770693 cgaattggtcctctaactattaaatgttttaaaatggtcctttagctttgttttagtcatcaatttgatccta-ttttattaattttaaacc 44770603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 314 - 408
Target Start/End: Complemental strand, 41767243 - 41767150
Alignment:
Q  314 cgaattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaacctct 408  Q
    ||||||| ||| |||||||||||||||| ||||||||||| |||||||| |||||| ||| | |||| |  || |||||||||||||||||||||    
T  41767243 cgaattggtcccctaactattaaacgtttcaaaatggtcccttatctttattttagtcattattttggtccta-ttttattaattttaaacctct 41767150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 43414418 - 43414484
Alignment:
Q  314 cgaattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttg 380  Q
    ||||||| ||| |||||||||||||||| |||||||||||||||||| ||||||   ||||||||||    
T  43414418 cgaattggtcccctaactattaaacgtttcaaaatggtcctttatctatgttttcatcatcaatttg 43414484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 375
Target Start/End: Complemental strand, 43416047 - 43415986
Alignment:
Q  314 cgaattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatca 375  Q
    ||||||| |||  ||||||||||||||| |||||||||| |||||||||||||||| |||||    
T  43416047 cgaattggtcccttaactattaaacgtttcaaaatggtcttttatctttgttttagtcatca 43415986  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 44769749 - 44769804
Alignment:
Q  347 atggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaa 403  Q
    |||||| |||||||||||||||| |||||||||||| ||| ||||||||||||||||    
T  44769749 atggtcatttatctttgttttagtcatcaatttgatcata-ttttattaattttaaa 44769804  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 361
Target Start/End: Complemental strand, 11081103 - 11081064
Alignment:
Q  322 tcctctaactattaaacgttacaaaatggtcctttatctt 361  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  11081103 tcctctaactattaaacgttccaaattggtcctttatctt 11081064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 404
Target Start/End: Original strand, 41766171 - 41766248
Alignment:
Q  326 ctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaac 404  Q
    |||||||||||| |||  ||||||||| |||||||||||||||| |||   |||| || || |||||||||||||||||    
T  41766171 ctaactattaaaggttttaaaatggtcatttatctttgttttagtcatagttttggttcta-ttttattaattttaaac 41766248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 403
Target Start/End: Original strand, 9189444 - 9189518
Alignment:
Q  327 taactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaa 403  Q
    ||||||||||||||| |||  |||||| ||||||||||||  | |||||||||| | ||| ||||||||||||||||    
T  9189444 taactattaaacgtttcaatttggtcc-ttatctttgtttctgtcatcaatttggtcata-ttttattaattttaaa 9189518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 314 - 405
Target Start/End: Complemental strand, 43704531 - 43704441
Alignment:
Q  314 cgaattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaacc 405  Q
    ||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||| ||||| ||| ||  || ||||||||||||||||||    
T  43704531 cgaattggtcccctaactattaaacgtttcaaaatggtcctttatctttgttttagtcatcattttaatccta-ttttattaattttaaacc 43704441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 314 - 404
Target Start/End: Complemental strand, 35045973 - 35045884
Alignment:
Q  314 cgaattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaac 404  Q
    ||||||| || ||||||||||||||||| |||||||||| |||||||||||||||  ||||||||||||  || |||||||||||||||||    
T  35045973 cgaattggtcttctaactattaaacgtttcaaaatggtcatttatctttgttttaatcatcaatttgatccta-ttttattaattttaaac 35045884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 403
Target Start/End: Original strand, 35044668 - 35044745
Alignment:
Q  326 ctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaa 403  Q
    |||||||||||||||| ||||||| ||||||||||||||||||  |||||||||| | || |||||||||||||||||    
T  35044668 ctaactattaaacgtttcaaaatgatcctttatctttgttttaatcatcaatttggtcatttttttattaattttaaa 35044745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 403
Target Start/End: Complemental strand, 36584984 - 36584896
Alignment:
Q  314 cgaattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaa 403  Q
    ||||||| ||| ||||||||||||| || |||||||||||||||||||| |||||| |||||||||| | ||| ||||||||||||||||    
T  36584984 cgaattggtcccctaactattaaacatttcaaaatggtcctttatctttattttagtcatcaatttggtcata-ttttattaattttaaa 36584896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 408
Target Start/End: Complemental strand, 23153697 - 23153616
Alignment:
Q  326 ctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaacctct 408  Q
    |||||||||||||||| |||  ||||| ||||||||||||||   ||||||||| || ||| |||||||||||||||||||||    
T  23153697 ctaactattaaacgtttcaatttggtcatttatctttgtttttatcatcaatttaatcata-ttttattaattttaaacctct 23153616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 408
Target Start/End: Original strand, 47535708 - 47535789
Alignment:
Q  326 ctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaacctct 408  Q
    |||||||||||||||| |||  ||||||||||||||||||||   |||||||||| |  || |||||||||||||||||||||    
T  47535708 ctaactattaaacgtttcaatttggtcctttatctttgtttttatcatcaatttggtccta-ttttattaattttaaacctct 47535789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 380
Target Start/End: Original strand, 40321119 - 40321172
Alignment:
Q  327 taactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttg 380  Q
    ||||||||||||||| ||||||| ||||||||||||||||||  ||||||||||    
T  40321119 taactattaaacgtttcaaaatgatcctttatctttgttttaatcatcaatttg 40321172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 327 - 403
Target Start/End: Original strand, 33070655 - 33070729
Alignment:
Q  327 taactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaa 403  Q
    ||||||||||||||| |||  ||||| |||||||||||||| | |||||||||||| ||| ||||||||||||||||    
T  33070655 taactattaaacgtttcaatttggtc-tttatctttgtttttgtcatcaatttgatcata-ttttattaattttaaa 33070729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 405
Target Start/End: Original strand, 42520259 - 42520348
Alignment:
Q  314 cgaattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaacc 405  Q
    ||||||| ||| |||| ||||||||||| |||| ||||||| |||||||||||||| |||||||||  | ||| |||||| |||||||||||    
T  42520259 cgaattggtcccctaaatattaaacgtttcaaa-tggtcctgtatctttgttttagtcatcaattttgtcata-ttttatcaattttaaacc 42520348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 326 - 380
Target Start/End: Complemental strand, 42521325 - 42521271
Alignment:
Q  326 ctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttg 380  Q
    |||| ||||||||||| |||||||||||| || ||||||||||| ||||||||||    
T  42521325 ctaattattaaacgtttcaaaatggtcctctacctttgttttagtcatcaatttg 42521271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 404
Target Start/End: Complemental strand, 40322285 - 40322225
Alignment:
Q  343 caaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaac 404  Q
    |||||||||| |||||||||||||||  ||||||||||||  || |||||||||||||||||    
T  40322285 caaaatggtcttttatctttgttttaatcatcaatttgatccta-ttttattaattttaaac 40322225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 367
Target Start/End: Complemental strand, 16957483 - 16957432
Alignment:
Q  316 aattgatcctctaactattaaacgttacaaaatggtcctttatctttgtttt 367  Q
    ||||||| |||||||||||||||||| |||  ||||||||||| ||||||||    
T  16957483 aattgattctctaactattaaacgtttcaatttggtcctttatttttgtttt 16957432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 408
Target Start/End: Complemental strand, 21248336 - 21248243
Alignment:
Q  314 cgaattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaacctct 408  Q
    ||||||||||  |||||||||||||||| ||||||||||| ||||||||||||||| ||| | |||| |  || |||||||||||||||||||||    
T  21248336 cgaattgatctcctaactattaaacgtttcaaaatggtcccttatctttgttttagtcattattttggtccta-ttttattaattttaaacctct 21248243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 404
Target Start/End: Complemental strand, 50003302 - 50003213
Alignment:
Q  314 cgaattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaac 404  Q
    ||||||| ||| |||||||||||||||| |||||||||||||||| |||||||||  |||||||||| |  || |||||||||||||||||    
T  50003302 cgaattggtcccctaactattaaacgtttcaaaatggtcctttatgtttgttttaatcatcaatttggtccta-ttttattaattttaaac 50003213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 404
Target Start/End: Original strand, 21247275 - 21247362
Alignment:
Q  316 aattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaac 404  Q
    ||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||| ||| | |||| || || |||||||||||||||||    
T  21247275 aattggtcccctaactattaaacgtttcaaaatggtcccttatctttgttttagtcataattttggttcta-ttttattaattttaaac 21247362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 404
Target Start/End: Original strand, 50002453 - 50002539
Alignment:
Q  317 attgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaac 404  Q
    |||| ||| |||||||||||||||| | |||||||||||||| |||||||||  |||||||||  |  || |||||||||||||||||    
T  50002453 attggtcccctaactattaaacgtttcgaaatggtcctttatgtttgttttaatcatcaatttagtccta-ttttattaattttaaac 50002539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 408
Target Start/End: Complemental strand, 50765849 - 50765761
Alignment:
Q  318 ttgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaacctct 408  Q
    |||||| | ||||||||||||||| |||  |||||||| ||||||||||| | |||| |||||||| || |||||||||||||||| ||||    
T  50765849 ttgatcttttaactattaaacgtttcaatttggtcctt-atctttgttttggtcatcgatttgattcta-ttttattaattttaaatctct 50765761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 403
Target Start/End: Complemental strand, 55387714 - 55387637
Alignment:
Q  325 tctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaa 403  Q
    |||||||||||||||||  || ||| || |||||||||||||||  |||||||||| | ||| ||||||| ||||||||    
T  55387714 tctaactattaaacgttttaagatgatcttttatctttgttttaatcatcaatttggtcata-ttttattgattttaaa 55387637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 408
Target Start/End: Original strand, 5409409 - 5409468
Alignment:
Q  348 tggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaacctct 408  Q
    ||||||||||||||||||||   ||||||||||| |  | |||||||||||||||||||||    
T  5409409 tggtcctttatctttgttttcatcatcaatttga-tccaattttattaattttaaacctct 5409468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 316 - 405
Target Start/End: Original strand, 10330745 - 10330833
Alignment:
Q  316 aattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaacc 405  Q
    ||||| ||| ||||| |||||||||| |||||||||| |||||||||||||||||||| |||||| |  || ||||||||||||||||||    
T  10330745 aattggtcccctaacgattaaacgtttcaaaatggtcatttatctttgttttagccattaatttggtccta-ttttattaattttaaacc 10330833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 327 - 404
Target Start/End: Original strand, 38593081 - 38593157
Alignment:
Q  327 taactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaac 404  Q
    ||||||||||||||| |||||||||||||| |||||||||||| |||||||||| |  || |||||||||||||||||    
T  38593081 taactattaaacgtttcaaaatggtcctttgtctttgttttagtcatcaatttggtccta-ttttattaattttaaac 38593157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 327 - 404
Target Start/End: Original strand, 38596677 - 38596753
Alignment:
Q  327 taactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaac 404  Q
    ||||||||||||||| |||||||||||||| |||||||||||| |||||||||| |  || |||||||||||||||||    
T  38596677 taactattaaacgtttcaaaatggtcctttgtctttgttttagtcatcaatttggtccta-ttttattaattttaaac 38596753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 408
Target Start/End: Complemental strand, 372034 - 371953
Alignment:
Q  326 ctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaacctct 408  Q
    |||||||||||||||| |||  || |||||||||||||||||   ||||||||||||  || |||||||||||||||||||||    
T  372034 ctaactattaaacgtttcaatttgatcctttatctttgttttcatcatcaatttgatccta-ttttattaattttaaacctct 371953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 404
Target Start/End: Complemental strand, 38594113 - 38594037
Alignment:
Q  327 taactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaac 404  Q
    |||||||||||||||  ||||||||| ||||||||| |||||| ||| |||||| |  || |||||||||||||||||    
T  38594113 taactattaaacgttttaaaatggtcatttatctttattttagacataaatttggtccta-ttttattaattttaaac 38594037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 404
Target Start/End: Complemental strand, 38597709 - 38597633
Alignment:
Q  327 taactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaac 404  Q
    |||||||||||||||  ||||||||| ||||||||| |||||| ||| |||||| |  || |||||||||||||||||    
T  38597709 taactattaaacgttttaaaatggtcatttatctttattttagacataaatttggtccta-ttttattaattttaaac 38597633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 314 - 403
Target Start/End: Original strand, 9850006 - 9850094
Alignment:
Q  314 cgaattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaa 403  Q
    ||||||| |||  |||||||| |||||| |||||||||||||||| |||||||||| ||||||||||||  || ||||||||||||||||    
T  9850006 cgaattggtcccataactattgaacgtttcaaaatggtcctttatatttgttttagtcatcaatttgatccta-ttttattaattttaaa 9850094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 18655486 - 18655538
Alignment:
Q  316 aattgatcctctaactattaaacgttacaaaatggtcctttatctttgtttta 368  Q
    ||||||| |||||||||||||||||| ||||||| |  |||||||||||||||    
T  18655486 aattgattctctaactattaaacgtttcaaaatgtttatttatctttgtttta 18655538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 404
Target Start/End: Original strand, 13561328 - 13561404
Alignment:
Q  327 taactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaac 404  Q
    ||||||||||||||| |||||||||| |||||||||||| ||| |||||||||| |  || |||||||||||||||||    
T  13561328 taactattaaacgtttcaaaatggtcttttatctttgttatagtcatcaatttggtccta-ttttattaattttaaac 13561404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 404
Target Start/End: Complemental strand, 13562362 - 13562286
Alignment:
Q  327 taactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaac 404  Q
    ||||||||||||||| |||||||||||||||||||| |||||| ||| |||||| |  || |||||||||||||||||    
T  13562362 taactattaaacgtttcaaaatggtcctttatctttattttagtcataaatttggtccta-ttttattaattttaaac 13562286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 382
Target Start/End: Original strand, 24317087 - 24317154
Alignment:
Q  315 gaattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgat 382  Q
    ||||| ||||| ||||||||||||||| |||  ||||| |||||||||||||| |||||| |||||||    
T  24317087 gaattaatcctttaactattaaacgtttcaatttggtcatttatctttgttttcgccatcgatttgat 24317154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 404
Target Start/End: Original strand, 25437820 - 25437908
Alignment:
Q  314 cgaattgatcctctaactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaac 404  Q
    ||||||||| |  ||||||||||||||| |||  ||||| |||||||||||||| ||||||||| ||||  || |||||||||||||||||    
T  25437820 cgaattgattccttaactattaaacgtttcaatttggtc-tttatctttgttttcgccatcaatctgatccta-ttttattaattttaaac 25437908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 403
Target Start/End: Complemental strand, 11724362 - 11724288
Alignment:
Q  327 taactattaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaa 403  Q
    ||||||||||||||| |||  |||||||| ||||||||||| | |||||||||||| ||| ||||||| ||||||||    
T  11724362 taactattaaacgtttcaatttggtcctt-atctttgttttcgtcatcaatttgatcata-ttttattgattttaaa 11724288  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 408
Target Start/End: Complemental strand, 24318109 - 24318050
Alignment:
Q  348 tggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaacctct 408  Q
    |||||||||||||||||||| | ||||||||||||   | |||||||||||| ||||||||    
T  24318109 tggtcctttatctttgttttcgtcatcaatttgatccca-ttttattaatttcaaacctct 24318050  T

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Target: scaffold0013 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 403
Target Start/End: Original strand, 27887 - 27956
Alignment:
Q  333 ttaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaa 403  Q
    ||||||||| |||||||||| ||||||||||||||||||||||| ||| |  || ||||||||||||||||    
T  27887 ttaaacgtttcaaaatggtcatttatctttgttttagccatcaagttggtccta-ttttattaattttaaa 27956  T

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Target: scaffold0013; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 405
Target Start/End: Original strand, 32158 - 32229
Alignment:
Q  333 ttaaacgttacaaaatggtcctttatctttgttttagccatcaatttgattatatttttattaattttaaacc 405  Q
    |||||||||  ||| ||||  ||||||||||||||||||||||||||| |  || ||||||||||||||||||    
T  32158 ttaaacgttttaaattggttatttatctttgttttagccatcaatttggtccta-ttttattaattttaaacc 32229  T

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