View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1553-INSERTION-6 (Length: 405)

Name: NF1553-INSERTION-6
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1553-INSERTION-6
NF1553-INSERTION-6
[»] chr6 (8 HSPs)
chr6 (268-405)||(10102066-10102203)
chr6 (254-318)||(10079943-10080007)
chr6 (264-318)||(10084142-10084196)
chr6 (268-307)||(10104035-10104074)
chr6 (172-214)||(10080049-10080091)
chr6 (243-275)||(10102218-10102250)
chr6 (172-214)||(10084245-10084287)
chr6 (172-214)||(10096704-10096745)


Alignment Details
Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 268 - 405
Target Start/End: Complemental strand, 10102203 - 10102066
Alignment:
Q  268 aaaataaaataagtttctttaataattaatttatgagtttgtttaaaagatatttcttgtcaataaattgtcaatcacagttctcacttcccattcatcc 367  Q
    |||| |||| || |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  10102203 aaaaaaaaaaaaatttcgttaataattaatttatgagtttctttaaaagatatttcttgtcaataaattgtcaatcacagctctcactttccattcatcc 10102104  T
Q  368 atccctcctctcttctctgttgttcatcttcactgcca 405  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10102103 atccctcctctcttctctgttgttcatcttcactgcca 10102066  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 10080007 - 10079943
Alignment:
Q  254 atatcatagattataaaataaaataagtttctttaataattaatttatgagtttgtttaaaagat 318  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||  ||||| ||| ||||||    
T  10080007 atatcttaaattataaaataaaataagtttctttaataattaatttaatagtttcttttaaagat 10079943  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 318
Target Start/End: Complemental strand, 10084196 - 10084142
Alignment:
Q  264 ttataaaataaaataagtttctttaataattaatttatgagtttgtttaaaagat 318  Q
    |||||||||||||||||||||||||||||||||||||  ||||| ||| ||||||    
T  10084196 ttataaaataaaataagtttctttaataattaatttaatagtttcttttaaagat 10084142  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 10104074 - 10104035
Alignment:
Q  268 aaaataaaataagtttctttaataattaatttatgagttt 307  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  10104074 aaaataaaataagtttctttaataattaatttataagttt 10104035  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 10080091 - 10080049
Alignment:
Q  172 agccattaaatccaacggttgtaccctctttggcgtgtgaagt 214  Q
    ||||||||||||||||||||||||||||||| || ||||||||    
T  10080091 agccattaaatccaacggttgtaccctctttagcatgtgaagt 10080049  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 275
Target Start/End: Complemental strand, 10102250 - 10102218
Alignment:
Q  243 acctttgcttaatatcatagattataaaataaa 275  Q
    |||||||||||||||||||||||||||||||||    
T  10102250 acctttgcttaatatcatagattataaaataaa 10102218  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 10084287 - 10084245
Alignment:
Q  172 agccattaaatccaacggttgtaccctctttggcgtgtgaagt 214  Q
    |||||||||||||||||| |||||||||||| || ||||||||    
T  10084287 agccattaaatccaacgggtgtaccctctttagcatgtgaagt 10084245  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 10096745 - 10096704
Alignment:
Q  172 agccattaaatccaacggttgtaccctctttggcgtgtgaagt 214  Q
    ||||||||||||||||||||||| |||||||||| ||||||||    
T  10096745 agccattaaatccaacggttgta-cctctttggcatgtgaagt 10096704  T

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