View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1553-Insertion-10 (Length: 661)
Name: NF1553-Insertion-10
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553-Insertion-10 |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 8 - 454
Target Start/End: Complemental strand, 40993415 - 40992962
Alignment:
| Q |
8 |
actttgacatttggattttgatttttgatggaagagacttcggaagggctaagattttgagtgtcccaaaagatgttgaagtttccatttgtgggagaag |
107 |
Q |
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| T |
40993415 |
actttgacatttggattttgatttttgatgaaagagacttcggaagggctaagattttgagtgtcccaaaagatgttgaagtttccatttgtgggagaag |
40993316 |
T |
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| Q |
108 |
gaggagatgaagtatcatagtcaatagcaaaggataaaatgaagtggaaattgacatttgggtttataggaacatctgaaaatttgacacctttgaattg |
207 |
Q |
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| T |
40993315 |
gaggagatgaagtatcatagtcaatagcaaaggataaaatgaagtggaaattgacatttgggtttataggaacatctgaaaatttgacacctttgaattg |
40993216 |
T |
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| Q |
208 |
agctccaatgtattctcggaataggtttgagtttgcagctaggatagttgatgcaaacaaggaagtcgttagaattaaaaggataaagcatggtttggga |
307 |
Q |
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| T |
40993215 |
agctccaatgtattctcggaataggtttgagtttgcagctaggatagttgatgcaaacaaggaagtcgttagaattaaaaggataaagcatggtttggga |
40993116 |
T |
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| Q |
308 |
atgtgaagttccatt-------gtgatattgctactttagagttatgctagatattgtacaaggaaatgatgcactatatgcgcttaaatactagtacta |
400 |
Q |
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| T |
40993115 |
atgtgaagttccattgtgaattgtgatattgctactttagagttaggctagatattgtacaaggaaatgatgcactatatgcgcttaaatactagtacta |
40993016 |
T |
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| Q |
401 |
gtttatagaaaggggctaaaagtaatatcagcagtgacacaataatttggaaga |
454 |
Q |
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| T |
40993015 |
gtttatagaaaggggctaaaagtaatatcagcagtgacacaataatttggaaga |
40992962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 576 - 629
Target Start/End: Complemental strand, 40992221 - 40992169
Alignment:
| Q |
576 |
caataagagatctaattcccaactaaaatgggttaagaaattaagatatctcag |
629 |
Q |
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| T |
40992221 |
caataagagatcgaattcccaactaaaat-ggttaagaaattaagatatctcag |
40992169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 29058891 - 29058675
Alignment:
| Q |
14 |
acatttggattttgatttttgatggaagagacttcggaagggctaagattttgagtgtcccaaaagatgttgaagtttccatttgtgggagaaggaggag |
113 |
Q |
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| T |
29058891 |
acatttggattttggctcttgatggatgaaacttgagaagggttaaggttttttgtgtcccaaaagatgttaaattttccattggtgggtgaaggagaag |
29058792 |
T |
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| Q |
114 |
atgaagtatcatagtcaatagcaaaggataaaatgaagtggaaattgacatttgggtttataggaacatctgaaaatttgacacctttgaattgagctcc |
213 |
Q |
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| T |
29058791 |
atgatgtgtcgtagtcgataccgaaggagagaatgaagtggaattcaacattagggtttataggaacatctgagaacttgatgttgttggattcagctcc |
29058692 |
T |
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| Q |
214 |
aatgtattctcggaata |
230 |
Q |
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| T |
29058691 |
aatgtattctctgaata |
29058675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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