View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1553-Insertion-11 (Length: 442)
Name: NF1553-Insertion-11
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553-Insertion-11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 8 - 442
Target Start/End: Original strand, 2272787 - 2273223
Alignment:
| Q |
8 |
tgtgcttcactgcaacattatttatttcctccaaatggacattgtttt---gttccatgtattgcttcccatattttgcttcactgtgttaattgatcaa |
104 |
Q |
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| T |
2272787 |
tgtgcttcactgcaacattatttatttcctccaaatggacattgtttttttgttccatgtattgcttcccatattttgcttcactgtgttaattgatcaa |
2272886 |
T |
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| Q |
105 |
tgtggtccatgcacctatgatttttcaattttggagctcttaaatattgtggtccttcataattattagagtcacgaacttcacatgatttgtattaaat |
204 |
Q |
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| T |
2272887 |
tgtggtccatgcacctatgatttttcaattttggagctcttaaatattgtggtccttcataattattagagtcacgaacttcacatgatttgtattaaat |
2272986 |
T |
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| Q |
205 |
gtcaaatattacttgaagttgcagattcctatactacaaatcaaaaattcaaagatgaaccatggcatgagatcagctagatttattatattcaaaacag |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272987 |
gtcaaatattacttgaagttgcagattcctatactacaaataaaaaattcaaagatgaaccatggcatgagatcagctagatttattatattcaaaacag |
2273086 |
T |
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| Q |
305 |
aaatcttgcacacacactctaattcttatataatatgccaattgatgagaatacaagacccccaataagattaactaacgtacaataataatttaatcaa |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2273087 |
aaatcttgcacacacactctaattcttatataatatgccaattgatgagtttacaaga-ccccaataagattaactaacgtacaataataatttaatcaa |
2273185 |
T |
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| Q |
405 |
ctctaattaaataacaacatggatctaaaacttaaaaa |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
2273186 |
ctctaattaaataacaacatggatctaaaacttaaaaa |
2273223 |
T |
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