View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1553-Insertion-13 (Length: 365)
Name: NF1553-Insertion-13
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553-Insertion-13 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 8 - 365
Target Start/End: Complemental strand, 42621806 - 42621450
Alignment:
| Q |
8 |
attaattatacgagtcgaatgccatattcctttagggatgtaccttggttattttgaatggaataaaccaatatagccgttactgcaatgaagttaagat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42621806 |
attaattatacgagtcgaatgccatattcctttagggatataccttgattattttgaatggaataaaccaatatagtcgttactgcaatgaagttaagat |
42621707 |
T |
|
| Q |
108 |
gattgcaaattacctagttccatagtgaatttgtatgtattgtgatttgctcatgtttgtttctaaactgcaagttagcttgctaattagttagttacaa |
207 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42621706 |
gattgcatattacctagttccatagtgaatttgtatgtattgcgatttgctcatgtttgttactaaactgcaagttagcatgctaattagttagttacaa |
42621607 |
T |
|
| Q |
208 |
tggtcctgtgtgattacttgcacaataagctagcatatagcttcatttgtatataaatagtacttgtacaatccttatcaatcaatgaattcactatctt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
42621606 |
tggtcctgtgtgattacttgcacaataagctagcatagagcttcatttgtatataaatagtactt-tacaatccttataaatcaatgaattcactatctt |
42621508 |
T |
|
| Q |
308 |
cattcacttcataataatagttgaatccacattttttatcatgtcaattttcagttta |
365 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42621507 |
cattcacttcataataacagttgaatccacattttttatcatgtcaattttcagttta |
42621450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 211 - 323
Target Start/End: Original strand, 45639546 - 45639658
Alignment:
| Q |
211 |
tcctgtgtgattacttgcacaataagctagcatatagcttcatttgtatataaatagtacttgtacaatccttatcaatcaatgaattcactatcttcat |
310 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||| || |||||||| |||| ||||||||| ||||| |
|
|
| T |
45639546 |
tcctatgtgattacttgcacaataagctaccattgagctacatttgtatataaatagcacttgtacagtcattatcaattaatggattcactatattcat |
45639645 |
T |
|
| Q |
311 |
tcacttcataata |
323 |
Q |
| |
|
||||||||||||| |
|
|
| T |
45639646 |
tcacttcataata |
45639658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 195 - 314
Target Start/End: Complemental strand, 9101176 - 9101057
Alignment:
| Q |
195 |
tagttagttacaatggtcctgtgtgattacttgcacaataagctagcatatagcttcatttgtatataaatagtacttgtacaatccttatcaatcaatg |
294 |
Q |
| |
|
||||||||| || || |||| ||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
9101176 |
tagttagtttcagtgatcctacgtgattacttgcacaataagctacagtatagcttcattcgtatataaatagaggttgtacaatcattatcaatcaatg |
9101077 |
T |
|
| Q |
295 |
aattcactatcttcattcac |
314 |
Q |
| |
|
|||| ||||| ||||||||| |
|
|
| T |
9101076 |
aatttactattttcattcac |
9101057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 45210702 - 45210790
Alignment:
| Q |
178 |
caagttagcttgctaattagttagttacaatggtcctgtgtgattacttgcacaataagctagcatatagcttcatttgtatataaata |
266 |
Q |
| |
|
||||||| |||||||| ||||||||| | || |||| ||||| ||| ||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
45210702 |
caagttaccttgctaagtagttagtttaagtgatcctatgtgactacatgcacaataagctagaatagagcttcatttgtatataaata |
45210790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 313
Target Start/End: Complemental strand, 38638434 - 38638332
Alignment:
| Q |
211 |
tcctgtgtgattacttgcacaataagctagcatatagcttcatttgtatataaatagtacttgtacaatcctta-tcaatcaatgaattcactatcttca |
309 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| || |||||||||||||||||| | ||||||| || || ||||||| |||||||||||| |||| |
|
|
| T |
38638434 |
tcctgtgtggttacttacacaataagctagcatagagtctcatttgtatataaatagcaattgtacattcaatattcaatcattgaattcactat-ttca |
38638336 |
T |
|
| Q |
310 |
ttca |
313 |
Q |
| |
|
|||| |
|
|
| T |
38638335 |
ttca |
38638332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 259
Target Start/End: Complemental strand, 33739838 - 33739765
Alignment:
| Q |
186 |
cttgctaattagttagttacaatggtcctgtgtgattacttgcacaataagctagcatatagcttcatttgtat |
259 |
Q |
| |
|
|||||||| |||||||| ||||| |||| ||||||||||||||||||||| || | | |||||||||||||| |
|
|
| T |
33739838 |
cttgctaagtagttagtaacaataatcctatgtgattacttgcacaataagttacgacagagcttcatttgtat |
33739765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University