View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1553-Insertion-19 (Length: 670)
Name: NF1553-Insertion-19
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553-Insertion-19 |
 | |
|
| [»] chr7 (7 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 608; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 7 - 670
Target Start/End: Original strand, 47486386 - 47487051
Alignment:
| Q |
7 |
atacttcacttttccttcttccaccaatttcttaagttcacctacctgtaatagaagaaaattgttaacaatgcatctagtgtaataagtcagataatgt |
106 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47486386 |
atacttcacttttccttcttccaccaacttcataagttcacctacctgtaatagaagaaacttgttaacaatgcatctagtgtaataagtcagataatgt |
47486485 |
T |
|
| Q |
107 |
atattaataagaaataacatatgtgatgcactat--gctcaaaata-aaaaccttaccgtatcctctataggcacagatgtatccactctgtgctgataa |
203 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47486486 |
atatcaataagaaataacatatgtgatgcactatatgctcaaaatagaaaaccttaccgtatcctctataggcacagatgtatccactctgtgctgataa |
47486585 |
T |
|
| Q |
204 |
tacagatcaatgtattcgacatcaagacgtttcaagctagcttcgcagcatgaacgcacataatccggtgaacccttgattaccataccagaatcatcgt |
303 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47486586 |
tacagatcaatgtattcgacatcgagacgtttcaagctagcttcgcagcatgaacgcacataatccggtgaacc-ttgattaccataccagaatcatcgc |
47486684 |
T |
|
| Q |
304 |
ttctggctataccgaattttgtagccacctggaccttttctctaggtagttgctttaaagcctagtcaacaaaaccaaataattataaactaaaattagc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47486685 |
ttctggctataccgaattttgtagccacctggaccttttctctaggtagttgctttaaagcctagtcaacaaaaccaaataattataaactaaaattagc |
47486784 |
T |
|
| Q |
404 |
atgaagtttcatttgcaatataaaatttagaacattaaagaaattcttggtccgtagttatttgtatgcatgtacctttccaaccaatatttcattacca |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47486785 |
atgaagtttcatttgcaatataaaatttagaacattaaagaaattcttggtacgtagttatttgtatgcatgtacctttccaaccaatatttcattacca |
47486884 |
T |
|
| Q |
504 |
ccatcgactccataaacatcagcagtatcaaataaagtgatgcctttactaaatgcatacttaattatggaaataccatcttgctcaggaagaagatcac |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47486885 |
ccatcgactccataaacatcagcagtatcaaataaagtgatgcctttactaaatgcatacttaattatggaaataccatcttgctcaggaagaagatcac |
47486984 |
T |
|
| Q |
604 |
tgtaggctccactgagtcccatacacccaaatcccatttttgaaacctgaaagccttgggttccaag |
670 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47486985 |
tgtaggctccaccgagtcccatacacccaaatcccatttttgaaacctgaaagccttgggttccaag |
47487051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 162 - 386
Target Start/End: Original strand, 47477253 - 47477474
Alignment:
| Q |
162 |
gtatcctctataggcacagatgtatccactctgtgctgataatacagatcaatgtattcgacatcaagacgtttcaagctagcttcgcagcatgaacgca |
261 |
Q |
| |
|
|||||||| |||||||| | |||||| ||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
47477253 |
gtatcctcaataggcacggttgtatcgactctgtgctgataatagagatcaatgtattcaacattgagacgtttcaagctagcttcgcagcttgaacgca |
47477352 |
T |
|
| Q |
262 |
cataatccggtgaacccttgattaccataccagaatcatcgtttctggctataccgaattttgtagccacctggaccttttctctaggtagttgctttaa |
361 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||| | | | |||||| |||||| ||||||||||||||||||| ||||||||| || ||||||||||| |
|
|
| T |
47477353 |
catactccggtgaacctttgatgcccatacc---accgccacttctggatataccaaattttgtagccacctggatcttttctctgggcagttgctttaa |
47477449 |
T |
|
| Q |
362 |
agcctagtcaacaaaaccaaataat |
386 |
Q |
| |
|
|||||||||||||||| |||||||| |
|
|
| T |
47477450 |
agcctagtcaacaaaatcaaataat |
47477474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 476 - 670
Target Start/End: Original strand, 47474191 - 47474385
Alignment:
| Q |
476 |
tacctttccaaccaatatttcattaccaccatcgactccataaacatcagcagtatcaaataaagtgatgcctttactaaatgcatacttaattatggaa |
575 |
Q |
| |
|
||||||||||| || ||||||||| ||||| ||||||| | ||||||||||||||| ||||| | ||||||||| || ||||| ||||||| |||| |
|
|
| T |
47474191 |
tacctttccaagtaaaatttcattagcaccactacctccatagatatcagcagtatcaaaaaaagtaacgcctttactgaaagcatagttaattacggaa |
47474290 |
T |
|
| Q |
576 |
ataccatcttgctcaggaagaagatcactgtaggctccactgagtcccatacacccaaatcccatttttgaaacctgaaagccttgggttccaag |
670 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||| |||||| |||||||||||||||| || |||| |||||||||||||||||||||||||||||| |
|
|
| T |
47474291 |
ataccatcttgttcaggaagaggatcattgtaagctccagtgagtcccatacacccgaaacccaattttgaaacctgaaagccttgggttccaag |
47474385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 476 - 631
Target Start/End: Original strand, 47477683 - 47477838
Alignment:
| Q |
476 |
tacctttccaaccaatatttcattaccaccatcgactccataaacatcagcagtatcaaataaagtgatgcctttactaaatgcatacttaattatggaa |
575 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||| ||||||||||||||| || ||||| ||||||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
47477683 |
tacctttccaaccaaaatttcattcccaccatcgagtccataaacatcagcggtgtcaaaaaaagtgatgcctttactgaatgcatgattaattacggaa |
47477782 |
T |
|
| Q |
576 |
ataccatcttgctcaggaagaagatcactgtaggctccactgagtcccatacaccc |
631 |
Q |
| |
|
|| ||| || ||||||||| ||||| |||| |||||||||| |||||||||| |
|
|
| T |
47477783 |
atgccaatttcttcaggaagaggatcattgtatcctccactgagggccatacaccc |
47477838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 162 - 383
Target Start/End: Original strand, 47473919 - 47474149
Alignment:
| Q |
162 |
gtatcctctataggcacagatgtatccactctgtgctgataatacagatcaatgtattcgacatcaagacgtttcaagctagcttcgcagcatgaacgca |
261 |
Q |
| |
|
|||||||| |||| |||||| ||||| | ||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| || || || |||| |
|
|
| T |
47473919 |
gtatcctcaatagacacagaagtatcaattctgtgctgataatagagatcaatgtattcaacatcgagacgtttcaagctagcttcacaacacgagcgca |
47474018 |
T |
|
| Q |
262 |
cataatccggtgaacccttgat--taccat-------accagaatcatcgtttctggctataccgaattttgtagccacctggaccttttctctaggtag |
352 |
Q |
| |
|
| || || |||||||||||||| | ||| || |||| | || |||| | |||||| ||||||||||||| ||||| ||||||||| || | |
|
|
| T |
47474019 |
cgtactcaggtgaacccttgatggtcacatcagcgagacgagaaacgtctcttctagatataccaaattttgtagccaactggatcttttctctgggcaa |
47474118 |
T |
|
| Q |
353 |
ttgctttaaagcctagtcaacaaaaccaaat |
383 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| |
|
|
| T |
47474119 |
ttgctttaatgcctagtcaacaaaatcaaat |
47474149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 47473666 - 47473768
Alignment:
| Q |
2 |
ccaacatacttcacttttccttcttccaccaatttcttaagttcacctacctgtaatagaagaaaattgttaacaatgcatctagtgtaataagtcagat |
101 |
Q |
| |
|
|||| |||||| |||||||| |||||||||| |||||||||||||||||||| ||| | || ||| |||||||||| ||||||||| |||||| || || |
|
|
| T |
47473666 |
ccaatatacttaacttttccctcttccaccagtttcttaagttcacctacctataacacaacaaacttgttaacaacacatctagtgaaataagccaaat |
47473765 |
T |
|
| Q |
102 |
aat |
104 |
Q |
| |
|
||| |
|
|
| T |
47473766 |
aat |
47473768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 47476976 - 47477066
Alignment:
| Q |
14 |
acttttccttcttccaccaatttcttaagttcacctacctgtaatagaagaaaattgttaacaatgcatctagtgtaataagtcagataat |
104 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||| || | || ||| |||||||||| ||||||||| |||||| || ||||| |
|
|
| T |
47476976 |
acttttccctcttccaccagtttcttaagttcacctacctatagcacaacaaacttgttaacaacacatctagtgaaataagccaaataat |
47477066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University