View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1553-Insertion-7 (Length: 484)
Name: NF1553-Insertion-7
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 7 - 463
Target Start/End: Complemental strand, 18982827 - 18982376
Alignment:
| Q |
7 |
atcctgtatatagaatcaagtcaggtttgattggcaatctttatggtaaatggataatgcctctcacaaaagaagtgcaggttgaatacctgttgcgaag |
106 |
Q |
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| T |
18982827 |
atcctgtatatagaatcaagtcaggtttgattggcaatctttatggtaaatggataatgcctctcacaaaagaagtgcaggttgaatacctgttgcgaag |
18982728 |
T |
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| Q |
107 |
acttgattaaacagaagaagatggcttcgtctttttagaacttaatcaagtaatttttgcttttcaattcttagaacttgatgcaagtactcaagaactc |
206 |
Q |
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| T |
18982727 |
acttgattaaacagaagaagatggcttcgtctttttagaacttaatcaagtaatttttgcttttcaattcttagaacttgatgcaaatactcaagaactc |
18982628 |
T |
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| Q |
207 |
taggttgaggaaagttttcacctatttcttgagtggaggagaatgatgaagggtgttatttatcggaannnnnnnnccgttaaagttttgagacttttta |
306 |
Q |
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| T |
18982627 |
taggttgaggaaagttttcacctatttcttgagtggaggagaatgatgaagggtg-tgtttatcggattttttttttcctttaaattttgtgacttttt- |
18982530 |
T |
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| Q |
307 |
aggtggagggattatctcttaattcatggatcaagattcagggatagttggacttttattattctcagaattcaagtatttcttcaagaatattatcata |
406 |
Q |
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| T |
18982529 |
aggttgaggaattatctctt-attcat-gatcaagattcagggatagttggacttttattattctcagaatttaagtatttcttcaagtatattatcata |
18982432 |
T |
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| Q |
407 |
aagtgaaatattgcatttgtgattgaacaaaattaaggttttttcttcaaccgtgga |
463 |
Q |
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| T |
18982431 |
aagtgaaatattgcatttgtgattgaacaaaattaagg-tttttcttcaaccgtgga |
18982376 |
T |
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