View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1553-Insertion-8 (Length: 712)
Name: NF1553-Insertion-8
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553-Insertion-8 |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 151 - 617
Target Start/End: Complemental strand, 39915406 - 39914939
Alignment:
| Q |
151 |
ttctcgatatcagttcttagagttaatggtaatttgctgaaatgaatttcatatgagttgaccctatttcacttgtattttagtgtaggagtatttgttt |
250 |
Q |
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| T |
39915406 |
ttctcgatatcagttcttagagttaatggtaatttgctgaaatgaatttcatatgagttgaccctatttcacttgtattttagtgtaggagtatttgttt |
39915307 |
T |
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| Q |
251 |
ttctgaaatcaatattatggaaagaggtaccttaaacaacgctacacaataaagtctaagccagttccactcgagggatagagagattcccggagaaccg |
350 |
Q |
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| T |
39915306 |
ttctgaaatcaatattatgggaagaggtaccttaaacaacgctacacaataaagtctaagccagttccactcgagggatagagagattcccggagaaccg |
39915207 |
T |
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| Q |
351 |
agcgtgggcttaatattaaacccatcaattactagtatctcaatttattaatttatctttaaatcttaatcacgatatattgttcataataaaatgagtt |
450 |
Q |
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| T |
39915206 |
agcgtgggcttaatattaaacccattaattactagtatctcaatttattaatttatctttaaatcttaatcacgatatatggttcataataaaatgagtt |
39915107 |
T |
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| Q |
451 |
atacgtgtaggacaactaagcatgttctatatattgttttactaagtaatgagtat-aaaaatgtttggtgtacatccatatccatatgaatggagttac |
549 |
Q |
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| T |
39915106 |
atacgtgtaggacaactaagcatgttctatatattgttttactaagtaatgagtatgaaaaatgtttggtgtacatccatatccatatgaatgtagttac |
39915007 |
T |
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| Q |
550 |
atcttcagagataaagaaataaaagatagatatgataggaatagtgcttgagataaaatgaagtgctg |
617 |
Q |
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| T |
39915006 |
atcttgagagataaagaaataaaagatagatatgataggaatagtgctcgagataaaatgaagtgctg |
39914939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 39915536 - 39915477
Alignment:
| Q |
14 |
actttaacttaaaatatcatatttgaaagaaaaaataaataaaatttgaatccgttgcta |
73 |
Q |
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| T |
39915536 |
actttaacttaaaatatcatatttgaaagaaaaaataaataaaatttgaatccgttgcta |
39915477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 648 - 711
Target Start/End: Complemental strand, 39914904 - 39914841
Alignment:
| Q |
648 |
aatatcattattatgaa-tgattatttacttagtttttgtaagttgaactcatctatacttgtta |
711 |
Q |
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| T |
39914904 |
aatatcattattattaaatgattatttactta-tttttgtaagttgaactcatctatacttgtta |
39914841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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