View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1553-Insertion-9 (Length: 589)
Name: NF1553-Insertion-9
Description: NF1553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1553-Insertion-9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 8 - 589
Target Start/End: Original strand, 35407787 - 35408372
Alignment:
| Q |
8 |
ttaccatatgacattaaagatttagatataatgataactaaatcatgaatgcaagggttaaaatagtataaaatttgatgcaaaatgtaactttcacaga |
107 |
Q |
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| T |
35407787 |
ttaccatatgacattaaagatttagatataatgataactaaatcatgaatgcaagggttaaaatagtataaaatttgatgcaaaatgtaactttcacaga |
35407886 |
T |
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| Q |
108 |
tagatctagcttgcaaatgattctggctgatccttaattaaacttcaagttgttatcttctcattatattaaaatgtcaacaagatcaatttttcttttc |
207 |
Q |
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| T |
35407887 |
tagatctagcttgcaaatgattctggttgatcctcaattaaacttcaagttgttatcttcccattatattaaaatgtcaacaagatcaatttttcttttc |
35407986 |
T |
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| Q |
208 |
atcactctataaagttgcaattcaacttgacaccgaatcgttttaataaatttttaatttgagaattgaatgtaatcaagattgctttatttgtacttca |
307 |
Q |
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| T |
35407987 |
atcactctataaagttgcaattcaacttgacaccgaatcgttttaataaatttttaatttgagaattgaatgtaatcaagattgctttatttgtacttca |
35408086 |
T |
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| Q |
308 |
agttatattatcttttcttacactcttaaactttgttaaacattgttgtgatttgacaaatgnnnnnnnaatc---ataatattagtaatttactatttc |
404 |
Q |
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| T |
35408087 |
agttatattatcttttcttacactcttaaactttgttaaacattgttgtgatttgacaaatgtttttttaatcataataatattagtaatttactatttc |
35408186 |
T |
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| Q |
405 |
tgatggaagaagactttgcactaattatatgtactcaaataattaaaataaaatttgttcgtgtgcagcatgcgatcgcatacacaggatcatcacaaga |
504 |
Q |
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| T |
35408187 |
tgatggaagaagactttgcactaattatatgtactcaaataattaaaataaaatttgttcgtgtgcagcatgcgatcgcgtacacaggatcatcacaaga |
35408286 |
T |
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| Q |
505 |
gatctac-gtgcaaaagcatcaataagtgtgtgggatccatcaattgaagtgatgaacgagttcagtctctctcaaatttgggtcc |
589 |
Q |
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| T |
35408287 |
gatctacggtgcaaaagcatcaataagtgtgtgggatccatcaattgaagtgatgaacgagttcagtctctctcaaatttgggtcc |
35408372 |
T |
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