View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15530_low_2 (Length: 388)
Name: NF15530_low_2
Description: NF15530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15530_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 27606076 - 27605959
Alignment:
| Q |
106 |
acttactacaaaaggagatatcgtatttaccctatatttatccaagactcagaagaaaagattgaatattcatgaagctaaaagaacggacattggttag |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27606076 |
acttactacaaaaggagatatcgtatttaccctatatttgtccaagactcagaagaaaagattgaatattcatgaagctaaaagaacggacattggttag |
27605977 |
T |
|
| Q |
206 |
aacacccgtttaaaggac |
223 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
27605976 |
aacacccgtttaaaggac |
27605959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 27606222 - 27606112
Alignment:
| Q |
1 |
aatatctagatttgggtagaccataatcattcctgagacactataaaaatt---tattttcacaattttaagcatgtaaagcagaaagaacgttcatgta |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27606222 |
aatatctagatttgggtagaccataatcattcctgagacactatgaaaattgattatttttgcaattttaagcatgtaaagcagaaagaacgttcatgta |
27606123 |
T |
|
| Q |
98 |
cttgaacaact |
108 |
Q |
| |
|
||||||||||| |
|
|
| T |
27606122 |
cttgaacaact |
27606112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 27605852 - 27605806
Alignment:
| Q |
323 |
tgtgctgctagtgtttgttagtgttcttaggttccaacctagttgag |
369 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27605852 |
tgtgctgctagtgtttgttagtgttgttaggttccaacctagttgag |
27605806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University